Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7d16
         (353 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   7.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   7.5  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 181 HLESGGCRCR 210
           +L SGGC C+
Sbjct: 241 YLPSGGCHCK 250


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 215 YWPGLFAKALEGINVRDLITN 277
           +WP   + ALEG + +  I N
Sbjct: 223 FWPSFNSAALEGDDQQRAIIN 243


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 48  REQARLSSDNKEKQ 7
           R + RLSSDN  K+
Sbjct: 247 RAEGRLSSDNMSKK 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,486
Number of Sequences: 438
Number of extensions: 1476
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)