Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7d13
(381 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 158 3e-40
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 157 4e-40
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 29 0.33
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 26 1.7
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 3.0
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 4.0
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 4.0
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 25 4.0
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch... 25 5.3
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 5.3
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 5.3
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 5.3
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 5.3
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 24 7.0
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 24 7.0
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 24 7.0
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 24 9.3
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 24 9.3
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|... 24 9.3
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 24 9.3
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 24 9.3
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 158 bits (383), Expect = 3e-40
Identities = 74/113 (65%), Positives = 86/113 (76%), Gaps = 1/113 (0%)
Frame = +2
Query: 5 NGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQD 184
NGAVQKGMPHK YHGKTG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQD
Sbjct: 45 NGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQD 104
Query: 185 FLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS-GTEKPVLLAPIPYE 340
FL RVK NE KEAKA GKTV L+RQPAPP AH VS +PV L P+ Y+
Sbjct: 105 FLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 157 bits (382), Expect = 4e-40
Identities = 74/113 (65%), Positives = 86/113 (76%), Gaps = 1/113 (0%)
Frame = +2
Query: 5 NGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQD 184
NGAVQKGMPHK YHGKTG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQD
Sbjct: 45 NGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQD 104
Query: 185 FLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS-GTEKPVLLAPIPYE 340
FL RVK NE KEAKA GKTV L+RQPAPP AH VS +PV L P+ Y+
Sbjct: 105 FLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 28.7 bits (61), Expect = 0.33
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = -3
Query: 313 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 149
GF S+T SF+G W+ L + + G L G LQ + +++SL EV ++ + L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503
Query: 148 TDIDALRYN 122
++RY+
Sbjct: 504 RAFGSIRYS 512
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 26.2 bits (55), Expect = 1.7
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = -3
Query: 244 LAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESM 80
+A SLG Q +L +LSA G M D+ + PS+ TL D++TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 3.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 139 DALRYNPSANTLVDNHTES 83
D R N S N ++DNHT++
Sbjct: 29 DPARKNESTNDVIDNHTDT 47
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 4.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 170 KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 265
K DF KR E +R+ +E A KTV L Q
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 4.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 224 EAKAAGKTVNLKRQPAPPKAAHIVSGT 304
+ KA K + +QP+PP A H + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.0 bits (52), Expect = 4.0
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 132 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRN 311
SAS S S++S+ S D ++ +R R RKP + +P+ + + P + T +
Sbjct: 56 SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDKSK 114
Query: 312 P 314
P
Sbjct: 115 P 115
>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 211
Score = 24.6 bits (51), Expect = 5.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 244 LAGSLGFLQ*PLILFDSLKEVLSALGV 164
LAG L F + LFD LKE+ GV
Sbjct: 22 LAGDLVFRPNAIELFDELKEICKDAGV 48
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 5.3
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +3
Query: 153 SMSSTPSADKTSLRE 197
SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 5.3
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 191 KRVKENERLLK-EAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVL 319
K+ KE + LK E+ T + QP P SGTE V+
Sbjct: 269 KKKKEQKWTLKFESDKGTSTQCITHQPLPGSTPSFASGTENGVI 312
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 24.6 bits (51), Expect = 5.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 191 KRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKP 313
K +++ ER+ K + NL+R PPK + +E P
Sbjct: 83 KILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVP 123
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 24.6 bits (51), Expect = 5.3
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -3
Query: 268 WLSLQVDGLAGSLGF 224
WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 24.2 bits (50), Expect = 7.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 88 RCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP 189
R + +Q + K+YTE H + ++ +TRLP
Sbjct: 471 RFELEQPLNSKNYTEHHARVSNVMEMIRNKTRLP 504
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.2 bits (50), Expect = 7.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 56 GRVYNVTAHALGVIVN 103
G+ YN+T+H G VN
Sbjct: 234 GKTYNITSHVSGFYVN 249
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 24.2 bits (50), Expect = 7.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 122 IIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGK 244
I+ K +NI++EH+ S Q L +E+ EA GK
Sbjct: 808 ILGKSVNIKLEHISDS--MQSVLDNYRESISKQNEAIEMGK 846
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 23.8 bits (49), Expect = 9.3
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +2
Query: 176 RQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPI 331
+Q LK EN+ + K A VNL+ P P I T KP +A I
Sbjct: 500 KQKSLKPDTENQESSVKNKKAKSNVNLQYSPKTP-ICKINDETLKPPTIANI 550
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 23.8 bits (49), Expect = 9.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 145 DIDALRYNPSANTLVDN 95
D+DALR NP A L+DN
Sbjct: 33 DVDALRLNPEA-PLLDN 48
>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 572
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 263 QPAPPKAAHIVSGTEKPVLLA 325
Q A +A IV+G +KPVLLA
Sbjct: 207 QMAVDISAKIVNGKQKPVLLA 227
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 23.8 bits (49), Expect = 9.3
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 200 KENERLLKEA-KAAGKTVNLKRQPAPPKAAHIVSGTEKP 313
KE R+ EA +A RQ PP+ + V GT KP
Sbjct: 918 KEATRVANEALRAVSSFRRPPRQLIPPQQSTNVPGTSKP 956
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 161 KHSKCRQDFLKRVKENERLLKEAKAAGKT 247
K++KC F ++V+E +L E G+T
Sbjct: 17 KNTKCPDKFEQKVEEYLEVLNELHLTGRT 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,595,265
Number of Sequences: 5004
Number of extensions: 29722
Number of successful extensions: 123
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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