Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7d13
         (381 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                       88   3e-18
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)          31   0.42 
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)                    29   0.97 
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)                      29   0.97 
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  29   0.97 
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)                 28   2.2  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.2  
SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.2  
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)            28   2.9  
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)                   27   6.8  
SB_24590| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_21722| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)               26   9.0  
SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4)                   26   9.0  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_23489| Best HMM Match : DUF1393 (HMM E-Value=0.56)                  26   9.0  
SB_19771| Best HMM Match : DUF1014 (HMM E-Value=1.4)                   26   9.0  

>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score = 87.8 bits (208), Expect = 3e-18
 Identities = 38/46 (82%), Positives = 43/46 (93%)
 Frame = +2

Query: 5   NGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRIN 142
           NGAVQKGMPHKVYHGKTGRVYNVT  ALGV+VNK+V+G+I+ KRIN
Sbjct: 467 NGAVQKGMPHKVYHGKTGRVYNVTKRALGVVVNKQVKGKILAKRIN 512


>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
          Length = 565

 Score = 30.7 bits (66), Expect = 0.42
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 185 FLKRVKENERLLKEAKAAGKTVNLKRQPA-PPKAAHIVSGTEKPVLLAPIP 334
           F+KR +  +R L+E   A   +NL ++PA P K    +   EKPV   P P
Sbjct: 272 FVKRTQRRQRELEEVADA---INLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319


>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
          Length = 305

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 248 VNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 340
           VN  +   PP A + ++  ++PVL  P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160


>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
          Length = 271

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 131 KRINIRVEH-VKHSKCRQDFLKRVKENERLLKEAKAAGKT 247
           +RI   ++H ++  K +QDF+  +KE  RL +E+++   T
Sbjct: 39  ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 70   RDCSCSRCDCQQACSRKDYTEAHQYPC 150
            +D +C  CD  Q C   + T  HQ PC
Sbjct: 2330 QDPNCGWCDSAQQCMPGNQTRPHQEPC 2356


>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
          Length = 1458

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +2

Query: 131 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 310
           K I +  EH + S C Q F +    N  + ++  + GKT  + +     K  HI+S +EK
Sbjct: 413 KNIELLTEHWECSGCEQRFNRHDNYNRHVTEKRCSGGKTQLICK---GEKFKHIMSSSEK 469


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/71 (21%), Positives = 35/71 (49%)
 Frame = +2

Query: 131  KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 310
            +++ +        K R + ++   + +RLL+++++  K   L++ P P  A  + +  E 
Sbjct: 1536 RKLTVEQREPYRLKARDNRVRLKDQEKRLLRQSESEKKHAALEQPPTP--APQVETQPET 1593

Query: 311  PVLLAPIPYEF 343
            P+  A  P+ F
Sbjct: 1594 PIHQAASPFVF 1604


>SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +2

Query: 17  QKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEH 157
           ++G PH+ + G TGR       A+  + +K +  +++ +R NI + H
Sbjct: 108 KEGKPHENHSGLTGR-----RGAMRALASKDINAQLLKERFNINMPH 149


>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
          Length = 1139

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 10  CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQ 105
           C+S    +      D+S VQ+DCS  R DC +
Sbjct: 736 CNSSDIGSTPTILSDKSPVQQDCSSIRRDCSR 767


>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 153 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLP 287
           ++S+ PS  KT+   ++R     RKP +PAR ST       ++ P
Sbjct: 633 TLSAPPSRPKTAPTSAQRTPEPIRKPLVPARMSTDSTDAFKIQAP 677


>SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/41 (26%), Positives = 15/41 (36%)
 Frame = +1

Query: 28  ATQSIPWKDRSRVQRDCSCSRCDCQQACSRKDYTEAHQYPC 150
           A+ S+ W  R      C C  C    + S+   T     PC
Sbjct: 315 ASDSVRWSVRGGPGHACQCGLCTANGSTSKGKVTRRQNSPC 355


>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = +2

Query: 23  GMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRIN-IRVEHVKHSKCRQDFLKRV 199
           G  H     ++G +Y+      G + +       +PK I  + V+  KH  C  DF   +
Sbjct: 43  GDEHSAVVTESGHLYSFGCGGDGQLGHGDAEDSHVPKIIEGLDVQKYKHLACGSDFSAAI 102

Query: 200 KENERL 217
            EN  L
Sbjct: 103 TENGEL 108


>SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)
          Length = 729

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +2

Query: 149 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKP 313
           V H  ++     F+    ++++   +A+  G+ ++L  +P     AH++   EKP
Sbjct: 286 VMHKANALASGSFMATTPQSKQTKSKAQDGGRGLSLAGEPYSSHQAHLIQVFEKP 340


>SB_24590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = +2

Query: 50  KTGRVYNVTAHALGVIVNKRV--RGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLK 223
           +TG+V   T    G ++   +  RG +     N    H  HS CRQ+   + K  E + K
Sbjct: 112 RTGKVERRTPKVGGEMLGIPLVLRGILEMDPENALSHHSNHSFCRQEQHIQKKNTEEIEK 171

Query: 224 EAKAAGKTV 250
            AK    TV
Sbjct: 172 AAKNQSNTV 180


>SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
 Frame = -3

Query: 148 TDIDALR--YNPSANTLVDNHT-----ESMSSHVVHATCLSMVYFVWHTLLNCTI 5
           +D D LR  Y  +A  L   H        M+++    TCL M    W TLL  TI
Sbjct: 52  SDCDNLRPKYEKAARDLAKEHKFVMAKALMNTNSTQTTCLPMGVHYWRTLLAYTI 106


>SB_21722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = -3

Query: 313 GFLSSTDDVGSFRGSWLSLQVDGLAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDA 134
           G    T     F GSW      GL  +  FL+ PLIL+ ++   LS L  L        A
Sbjct: 26  GAYGKTPATRPFYGSW---PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERPSAA 82

Query: 133 LRYNPSAN-TLVDNHTES 83
            ++NP     +VD+ + S
Sbjct: 83  SQFNPCVGLEMVDHKSAS 100


>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
          Length = 654

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -3

Query: 235 SLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDAL--RYNPSANTLVDNHTE 86
           S+ F +   I  D+LK  L +  +     TD++ +  +YN + +TL+D+H +
Sbjct: 227 SVSFRKIKSINIDTLKNDLRSSELHHSPKTDLNGIVKKYNQTLSTLLDSHAQ 278


>SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4)
          Length = 382

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 126 YRSASISVLSMSSTPSADKTSL-RESKRMRGY*RKPRLPARPS 251
           YR +S    S  S+PS+D TS  R+SK +  Y    R P   S
Sbjct: 234 YRKSSFDASSPESSPSSDSTSSNRKSKFILDYNDNKRDPITAS 276


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 239  GKTVNLKRQPAPPKAAHIVSGTEK--PVLLAPIPYEFVA*SPIKY 367
            G T+    + AP K   + S   K  PV  AP+ Y  V  +P+KY
Sbjct: 928  GATIEHALESAPVKYTPVESAPVKYTPVESAPVKYTPVESAPVKY 972


>SB_23489| Best HMM Match : DUF1393 (HMM E-Value=0.56)
          Length = 223

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +2

Query: 182 DFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 340
           D  +R K+    LK+ + A ++VN  R P+P +  ++ +  +   L AP+  E
Sbjct: 167 DAAERQKKRRERLKQWRKA-RSVNRDRGPSPGRRKNVAAFDQDDYLEAPMDVE 218


>SB_19771| Best HMM Match : DUF1014 (HMM E-Value=1.4)
          Length = 606

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +2

Query: 101 NKRVRGRIIPKRINIRVEHVKHS----KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 268
           N R   R +   I+ R E +K      KCR   ++R+K +E++    KA     N+  Q 
Sbjct: 154 NARSAERRMQYMIHARQERLKEFQEGVKCRVKEMERIKRDEQMGNTYKAIEFERNVVHQS 213

Query: 269 APPKAAHI 292
           + PK A +
Sbjct: 214 SFPKKASL 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,418,832
Number of Sequences: 59808
Number of extensions: 249755
Number of successful extensions: 817
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)