Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7d12
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    45   1e-05
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    31   0.20 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.4  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.4  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    26   4.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   5.8  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   7.7  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   7.7  

>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
 Frame = +3

Query: 168 TRDTVQHYVDSFRVRTVGGNGGDGCISFLSVWCKDHAXXXXXXXXXXXHV-IFKATNSVR 344
           T  T   + D  R+R  GG+GG GC SF+    + +             V +     S  
Sbjct: 24  TEATQPKFQDKIRIRIQGGDGGQGCSSFIKEKFRPYGPPDGGNGGDGGSVYVAVKPGSFN 83

Query: 345 SLNHCKAVIQAKPGEKGFNKDCSGKNAGHVIVNVPIGTIIK 467
           +L+H   + +A  G  G   +  G     VI+ VP GT+I+
Sbjct: 84  NLSHLSQIHKASNGTNGKGGNRHGSCGKSVILYVPPGTVIR 124



 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +3

Query: 552 NKFFLTDTEQAPDIAEFGAAGETNIYHLEVRSLAHVGLLGFPNA 683
           N  FL++  ++P  A  G  GE  +  LE++++  +GL+G PNA
Sbjct: 204 NVHFLSENNRSPKFATKGLTGEQKLIELELKTICEIGLVGLPNA 247


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 96  PNTVSKRPYCDNVPKPLRSLKPKSTRDTVQHYVDSFRVRTVGGNGGDGCISFLSVW 263
           P+  ++ P+ DN P    S K  S RDT  HY ++ +  +   +   G  S  S W
Sbjct: 284 PSLANENPHSDN-PNLKYSSKTLSKRDTSSHYPETLKASSKHSSPVKGNSSISSTW 338


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/65 (27%), Positives = 23/65 (35%)
 Frame = -2

Query: 684 RHSGTPATRRGPVSVPPDGKCLFRLQPRTLLCPEPVLCP*GKICFLYLPPHPAPQQTSTP 505
           RH G  +    P S P        L+P T   P P + P        +P    P  +S P
Sbjct: 113 RHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLP 172

Query: 504 PCPNP 490
           P   P
Sbjct: 173 PPAQP 177


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 543 LPPHPAPQQTSTPPCPNPQSL 481
           LPP     +TSTPP P P SL
Sbjct: 403 LPPLGNASRTSTPPVPTPPSL 423


>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 461 NKKPKWSSDWGFGQGGVDVCCGAGWG 538
           +KKP+   +WG+    +D  C  G+G
Sbjct: 199 HKKPELKPEWGWDAWNIDTWCPLGYG 224


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 569 GHRTGSGHSRVRGCRRNKHLPSG 637
           GH + +G SR+ G   N HLPSG
Sbjct: 85  GHSSYAG-SRISGGNSNSHLPSG 106


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 230 SISSDSPNAKGIYIMLNCISSRLGFQTTERLRHVITVRSFRHCV 99
           S   D+ N  GI ++ +  SS++GF      + +IT +SF  C+
Sbjct: 379 SSGGDNKNDTGIPLIQSS-SSKVGFGPYALSKDLITAKSFHKCI 421


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 268 LHHTLRKDMQPSPPFPPTV 212
           L+H+L+  M PS P PP V
Sbjct: 166 LNHSLQNSMPPSTPTPPPV 184


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 543 LPPHPAPQQTSTPPCPNPQSL 481
           + P PAP Q + PP P PQ+L
Sbjct: 240 IAPVPAPNQAALPPIP-PQAL 259


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 496  KSPIT*PFWFFIIVPIGTLTMTCPAFLPLQS 404
            ++ IT  F+  I+ P+GTL  TC  FL + S
Sbjct: 1432 RARITTMFYGEILGPLGTLFFTCIPFLFINS 1462


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 448 GTLTMTCPAFLPLQSLLNPF 389
           G+LT+ CP  + L+ +L PF
Sbjct: 187 GSLTIDCPTPIDLRGMLGPF 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,910
Number of Sequences: 5004
Number of extensions: 57317
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)