Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7d12
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262... 58 6e-09
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909... 53 2e-07
03_06_0323 + 33121062-33121653,33121748-33121839,33122482-331225... 32 0.37
02_02_0136 + 7104633-7105247 31 1.1
01_03_0005 + 11568545-11569119,11569179-11569191 31 1.1
06_03_1000 - 26778993-26779478 29 2.6
08_01_0078 - 551178-551897,552168-552197 29 3.4
12_02_0263 - 16551831-16551909,16552668-16553173 29 4.5
09_02_0543 + 10427321-10428315,10428440-10429154 29 4.5
05_03_0627 - 16342211-16342264,16342332-16342412,16342751-163428... 29 4.5
11_01_0782 + 6543906-6544702,6545717-6547850 28 6.0
07_03_1778 + 29451902-29452166,29452665-29452849,29453504-294536... 28 6.0
07_01_0862 - 7172083-7172931 28 6.0
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 28 7.9
03_06_0339 + 33246043-33247350 28 7.9
02_05_0449 - 29107310-29107377,29107732-29107777,29107860-291079... 28 7.9
>07_03_1626 +
28223967-28225294,28225506-28225779,28225939-28226230,
28226492-28226651,28226809-28226917,28227004-28227099
Length = 752
Score = 58.0 bits (134), Expect = 6e-09
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 3/171 (1%)
Frame = +3
Query: 180 VQHYVDSFRVRTVGGNGGDGCISFLSVWCKDHAXXXXXXXXXXXHVIFKATNSVRSLNHC 359
V D+ ++ G+GG+G ++F +V + + SL
Sbjct: 293 VMRCFDTAKIYAKAGDGGNGVVAFRREKYVPLGGPSGGDGGRGGNVFVEVDGDMNSLLPF 352
Query: 360 KAVI--QAKPGEKGFNKDCSGKNAGHVIVNVPIGTIIKNQNGQV-IGDLDREGLMFVXXX 530
+ + +A G G + +G V+V VP GT++++ G V + +L R G +
Sbjct: 353 RKSVHFRAGRGAHGQGRQQAGAKGDDVVVKVPPGTVVRSAAGDVELLELMRPGQRALLLP 412
Query: 531 XXXXXXXNKFFLTDTEQAPDIAEFGAAGETNIYHLEVRSLAHVGLLGFPNA 683
N F + T +AP IAE G G LE++ +A VG++G PNA
Sbjct: 413 GGRGGRGNAAFKSGTNKAPRIAEKGEKGPEMWIDLELKLVADVGIVGAPNA 463
>11_08_0079 +
28189782-28189907,28190445-28190553,28190876-28190958,
28191500-28191562,28191658-28192854,28193247-28193310,
28193338-28193426,28194404-28194463,28195442-28195547,
28196057-28196069,28196940-28197111
Length = 693
Score = 52.8 bits (121), Expect = 2e-07
Identities = 32/109 (29%), Positives = 48/109 (44%)
Frame = +3
Query: 156 KPKSTRDTVQHYVDSFRVRTVGGNGGDGCISFLSVWCKDHAXXXXXXXXXXXHVIFKATN 335
KPK+ + VD FR+R GG+GG+GCIS VI + +
Sbjct: 35 KPKTAPLQSRGMVDRFRLRAKGGDGGNGCISLRRSRSDRQGKPDGGNGGRGGDVILECSR 94
Query: 336 SVRSLNHCKAVIQAKPGEKGFNKDCSGKNAGHVIVNVPIGTIIKNQNGQ 482
SV + + ++A G G +K+ G I VP+GT+I G+
Sbjct: 95 SVWDFSGLQHHMKASRGANGVSKNQIGTRGSDKIAQVPVGTVIHLVEGE 143
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 603 GAAGETNIYHLEVRSLAHVGLLGFPNA 683
G G LE++S+A VGL+G PNA
Sbjct: 324 GHPGTETYLILELKSIADVGLVGMPNA 350
>03_06_0323 +
33121062-33121653,33121748-33121839,33122482-33122565,
33123126-33123203,33123500-33123700,33123821-33123928,
33124145-33124219,33124338-33124537,33124654-33124722,
33125159-33125279,33126840-33127120,33127522-33127594
Length = 657
Score = 32.3 bits (70), Expect = 0.37
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 14/101 (13%)
Frame = +3
Query: 423 AGHVI-VNVPIGTIIKNQNGQVIGDL---------DREGLMFVXXXXXXXXXXNKFFLTD 572
AG + + VP+GT++K + G V+ DL R G + K +
Sbjct: 187 AGETLRIPVPVGTVVKRKKGAVLADLAHPGDEVIVARGGQGGISLIDVPEYRRRKAMVLS 246
Query: 573 TEQAPDIAE----FGAAGETNIYHLEVRSLAHVGLLGFPNA 683
D+++ G GE L +R +A VGL+G PNA
Sbjct: 247 PNIMRDVSDRVLIHGQPGEEVSLELILRVVADVGLVGLPNA 287
>02_02_0136 + 7104633-7105247
Length = 204
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 569 GHRTGSGHSRVRGCRRNKHLPSGGTLT 649
GHR G S R CR HLP+ G+ T
Sbjct: 18 GHRRHRGSSSERSCRAPSHLPAPGSAT 44
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 546 YLPPHPAPQQTSTPPCPNPQS 484
Y PP P P T TP CP P S
Sbjct: 54 YYPPPPPPVVTPTPQCPPPPS 74
>06_03_1000 - 26778993-26779478
Length = 161
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 518 CCGAGWGGR*RKQIFPHGH 574
CCG G GGR R+ FP H
Sbjct: 111 CCGGGGGGRPRRPFFPVPH 129
>08_01_0078 - 551178-551897,552168-552197
Length = 249
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 446 TNRYNNKKPKWSSDWGFGQGGVDVCCGAGWGGR*RKQIFPHGH 574
TN + ++ WSS G G G VC G+ R + P GH
Sbjct: 159 TNVFQEERTSWSSRSGHGDGS-RVCSYGQVVGKGRSMVLPIGH 200
>12_02_0263 - 16551831-16551909,16552668-16553173
Length = 194
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -2
Query: 576 LCP*GKICFLYLPPHPAPQQTSTPPCPNPQ 487
L P G I F PP P PQ PP P PQ
Sbjct: 72 LRPLGPIRFQQ-PPQPQPQPPQPPPQPQPQ 100
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 540 PPHPAPQQTSTPPCPNPQS 484
PP PAP PP P PQS
Sbjct: 36 PPPPAPDMPPPPPTPAPQS 54
>05_03_0627 -
16342211-16342264,16342332-16342412,16342751-16342849,
16343660-16343770,16343964-16344116,16344741-16344881,
16345456-16345513,16345852-16345967,16346292-16346405,
16346496-16346557,16348788-16348930,16349030-16349097,
16349200-16349379,16349835-16350013,16350447-16350636,
16350920-16350978,16351421-16351574,16352133-16352158,
16352567-16353014
Length = 811
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -3
Query: 554 VSSTSRPTPRRNKHQPLPVQIPNHLTILVFYYCTYWY 444
V S+P R KH P P Q N YY Y Y
Sbjct: 653 VDDESKPERRPTKHMPTPEQWTNVFNPAFSYYAYYCY 689
>11_01_0782 + 6543906-6544702,6545717-6547850
Length = 976
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 48 MRLIRLLQRLKVTIKTPNTVSKRPYCDNVPKPLRSLKPKSTRDTVQHYV-DSFRVRTVGG 224
+ + L +R +VTI V K PY N+ + L + +Q ++ ++ R++T+ G
Sbjct: 610 LETLDLRRRKEVTINLSTEVIKLPYLINLLGKFKLLNKAKRLNELQKFLSENCRLQTLAG 669
Query: 225 NGGDGCISF 251
DG F
Sbjct: 670 FSTDGSEGF 678
>07_03_1778 +
29451902-29452166,29452665-29452849,29453504-29453693,
29453990-29454168,29454263-29454314,29454426-29454553,
29454920-29455099,29455209-29455276,29455364-29455506,
29455682-29455743,29455874-29455987,29456180-29456320,
29456680-29456832,29456973-29457026,29457102-29457212,
29457339-29457512,29457600-29457680,29457788-29457886,
29457905-29458057
Length = 843
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -3
Query: 554 VSSTSRPTPRRNKHQPLPVQIPNHLTILVFYYCTYWY 444
V S+P R KH P P Q N YY Y Y
Sbjct: 576 VDDESKPERRPTKHMPTPEQWTNVFNPAYAYYVYYCY 612
>07_01_0862 - 7172083-7172931
Length = 282
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -2
Query: 612 LQPRTLLCPEPVLCP*GKICFLYLPPHPAPQQTSTPPCPNPQ 487
L PR P+ P K LY PP P ++ PP P PQ
Sbjct: 150 LPPRKKAMLFPLPLPPRKKPLLYPPPLPPKKKPLPPPSPPPQ 191
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 590 HSRVRGCRRNKHLPSGGTLTGPRRVAGV 673
H R R C+R + LP GG + RVA +
Sbjct: 157 HDRRRRCQRPRLLPDGGKIKAALRVAAL 184
>03_06_0339 + 33246043-33247350
Length = 435
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 588 PEPVLCP*GKICFLYLPPHPAPQQTSTPPCPNPQSLDHFG 469
P P L + LPP A ++ ++PP P PQ D G
Sbjct: 2 PPPPLLLAAAVAAAALPPPAAARRHASPPPPQPQHPDKAG 41
>02_05_0449 -
29107310-29107377,29107732-29107777,29107860-29107934,
29108053-29108122,29108313-29108408,29108728-29108914,
29109001-29109169,29109614-29109646,29109731-29109841,
29110070-29111256,29112380-29112448,29114417-29114975,
29115455-29115589,29115714-29115896
Length = 995
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +3
Query: 312 HVIFKATNSVRSLNHCKAVIQAKPGEKGFN-----KDCSGKNAGHVIVNVPIGT 458
H+IFK + C+AV+ G+ N K CSG+ + + V VP+ +
Sbjct: 719 HIIFKGPPGSGKSSLCRAVVTEIFGDSSLNVSHYLKSCSGQGSTSMPVLVPLSS 772
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,677,899
Number of Sequences: 37544
Number of extensions: 451404
Number of successful extensions: 2178
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2148
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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