Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7d12
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56503| Best HMM Match : No HMM Matches (HMM E-Value=.)              68   8e-12
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_38860| Best HMM Match : GRP (HMM E-Value=0.47)                      31   0.66 
SB_30628| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=1.2)            30   1.5  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)                     29   4.6  
SB_59068| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_13204| Best HMM Match : GRP (HMM E-Value=0.0017)                    28   8.1  

>SB_56503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 39/106 (36%), Positives = 57/106 (53%)
 Frame = +3

Query: 348 LNHCKAVIQAKPGEKGFNKDCSGKNAGHVIVNVPIGTIIKNQNGQVIGDLDREGLMFVXX 527
           L H K  ++A+ G  G   +  GKNA  +IV VP+GTI  + N +VI D+  EG   V  
Sbjct: 3   LAHVKKHLKAENGGSGGIDNRHGKNASDLIVKVPLGTIATH-NKEVIADISEEGESCVIA 61

Query: 528 XXXXXXXXNKFFLTDTEQAPDIAEFGAAGETNIYHLEVRSLAHVGL 665
                   N  F T T+QAP+ +  G  G+  +  LE++++A VGL
Sbjct: 62  QGGEGGLGNATFKTATDQAPEKSSQGTPGQERVIELELKTIADVGL 107


>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 825

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 605 PELCYVRSLFCVREEKFVSSTSRPTPRRNKHQP 507
           P+  Y++S+F +  + FV  TS P P+ + H P
Sbjct: 273 PQTLYMKSVFNITPDAFVCDTSNPIPQISVHPP 305


>SB_38860| Best HMM Match : GRP (HMM E-Value=0.47)
          Length = 212

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 93  TPNTVSKRPYCDNVPKPLRSLKPKSTRDTVQHYVD 197
           TP  V+ R YC+ +PK LR L  +ST  T + Y +
Sbjct: 175 TPKNVTFRKYCEGLPKELR-LPSESTATTFRKYCE 208


>SB_30628| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=1.2)
          Length = 172

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 531 PAPQQTSTPPCPNPQSLDHFG 469
           P   ++STPP P+P S+ HFG
Sbjct: 19  PFFNESSTPPTPSPPSITHFG 39


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 540 PPHPAPQQTSTPPCPNPQS 484
           PP P P Q STPP P P +
Sbjct: 695 PPPPPPPQPSTPPPPPPST 713


>SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)
          Length = 1452

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +3

Query: 81  VTIKTPNTVSKRPYCDNVPKPLRSLKPKSTRDTVQHYVD 197
           + +  P +++K PY ++  +PL S    ST D ++ +++
Sbjct: 272 IDLNPPESIAKDPYNESRQQPLHSYTTPSTFDKLKQFIE 310


>SB_59068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
 Frame = -2

Query: 639 PPDGKCLFRLQPRTLLCP----EPVLCP*GKICFLYLPP--HPAPQQTSTPPCP 496
           PP G+CL    P +   P     P L P G+ C  +  P    AP  T++PP P
Sbjct: 95  PPSGRCLAHPYPFSQKAPSSTTSPPLSPSGR-CLAHPYPFSQKAPSSTTSPPPP 147


>SB_13204| Best HMM Match : GRP (HMM E-Value=0.0017)
          Length = 723

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 488 WGFGQGGVDVCCGAGWGG 541
           WG+G GG   CCG G GG
Sbjct: 276 WGYGYGGHGGCCG-GCGG 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,196,545
Number of Sequences: 59808
Number of extensions: 466982
Number of successful extensions: 1608
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)