Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7d10
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)                     31   0.96 
SB_31553| Best HMM Match : RCSD (HMM E-Value=2.7)                      30   2.2  
SB_15780| Best HMM Match : Collagen (HMM E-Value=6e-06)                30   2.2  
SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.9  
SB_40430| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-19)          29   3.9  
SB_24193| Best HMM Match : Acetyltransf_1 (HMM E-Value=5.8e-08)        29   3.9  
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)                     29   3.9  
SB_23246| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.3e-09)        29   3.9  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   5.1  
SB_49922| Best HMM Match : PAN (HMM E-Value=2.1)                       28   8.9  
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_32746| Best HMM Match : Lentiviral_Tat (HMM E-Value=6.8)            28   8.9  
SB_29793| Best HMM Match : Trigger_N (HMM E-Value=3.3)                 28   8.9  

>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
          Length = 693

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +2

Query: 299 GYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQN 478
           G++       +SYPG  PA  A  G   P    G  +YP   P Q    T+  +P  P  
Sbjct: 34  GFNPPPSSVPVSYPGPPPAMYAVPGMPMPPAYPGMPTYP-PQPMQFLPGTLPGMPPPPMF 92

Query: 479 ASILSEKAV 505
           A +++ +A+
Sbjct: 93  AQMMAPQAM 101


>SB_31553| Best HMM Match : RCSD (HMM E-Value=2.7)
          Length = 139

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 548 SPKGDYHRDLHNQPPLPSR*V-SKHFE 471
           SPKGD   D+ + PP  S+ + SKHFE
Sbjct: 100 SPKGDQSTDIPDYPPTKSQRIPSKHFE 126


>SB_15780| Best HMM Match : Collagen (HMM E-Value=6e-06)
          Length = 88

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +2

Query: 335 YPGIT--PAPTAPRGHVTPHGAFGYQSYP 415
           YPGI   P P   RG + P G  GYQ  P
Sbjct: 2   YPGIEGPPGPKGDRGPIGPRGPQGYQGAP 30


>SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +2

Query: 299 GYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVT--PTQSYDTTIEWVPTTP 472
           G ++   PA  + P +   PT P G   P G     S P V   PT     T+   PT P
Sbjct: 466 GPTVPSGPAVPTGPTVPSGPTVPSGPTVPSGP-TVPSGPTVPSGPTVPSGPTVPSGPTVP 524

Query: 473 QNASIL 490
            ++++L
Sbjct: 525 SDSTVL 530



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
 Frame = +2

Query: 320 PAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVT--PTQSYDTTIEWVPTTPQNASILS 493
           P   S P +   PT P G   P G     S P V   PT     T+   PT P   ++ S
Sbjct: 455 PTVPSDPTVPAGPTVPSGPAVPTGP-TVPSGPTVPSGPTVPSGPTVPSGPTVPSGPTVPS 513

Query: 494 EKAVVAG 514
              V +G
Sbjct: 514 GPTVPSG 520


>SB_40430| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-19)
          Length = 253

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 502 CLLAKYRSILRSCRNPFNCCIIALGWC 422
           CL  + R   RSC  P+NC +I    C
Sbjct: 36  CLRVEIRGCERSCTTPYNCALILTTAC 62


>SB_24193| Best HMM Match : Acetyltransf_1 (HMM E-Value=5.8e-08)
          Length = 281

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 431 QSYDTTIEWVPTTPQNASILSEKAVVAGYEGHDGSPLWVI 550
           Q +D  I  + + PQN ++ S  ++V  Y+ H   PLW++
Sbjct: 87  QLFDAAISAI-SHPQNMALCSVDSMVLKYKKHGFEPLWLL 125


>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 437 YDTTIEWVPTTPQNASILSEKAVVAGYEGHDGSPLWVIRSQF 562
           Y+  + W+     ++S+ S   +V GY   DG P W++++ +
Sbjct: 381 YNKAMSWIYLHDSSSSVHS--VLVVGYGVEDGEPYWLVKNSW 420


>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
          Length = 231

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
 Frame = +2

Query: 287 SFQPGYSLGQQPAAMSYPGITPAPT-APRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVP 463
           S+ P  S    P+       TP P+  P    T      Y   P  TPT SY  T  + P
Sbjct: 7   SYTPTTSYTSTPSYTPTTSYTPTPSYTPTTSYTC--TTSYTPTPSYTPTPSYTPTTSYTP 64

Query: 464 TT 469
           TT
Sbjct: 65  TT 66



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +2

Query: 287 SFQPGYSLGQQPAAMSYPGITPAPT-APRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVP 463
           S+ P  S    P+  S    TP  +       TP  +  Y   P  TPT SY +T  + P
Sbjct: 79  SYTPTTSYTPTPSYTSTTSYTPTTSYTSTTSYTPTPS--YTPTPSYTPTPSYTSTTSYTP 136

Query: 464 TT 469
           TT
Sbjct: 137 TT 138


>SB_23246| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.3e-09)
          Length = 305

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 431 QSYDTTIEWVPTTPQNASILSEKAVVAGYEGHDGSPLWVI 550
           Q +D  I  + + PQN ++ S  ++V  Y+ H   PLW++
Sbjct: 87  QLFDAAISAI-SHPQNMALCSVDSMVLKYKKHGFEPLWLL 125


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
 Frame = +2

Query: 365  PRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQNASILSEKAVVAGYEGHDGSPLW 544
            P+    P GA  Y S     P  S     +WV   PQ A+I       A     +GSPLW
Sbjct: 2930 PKSKKRPKGAPFYASDG---PMHSTPMVHQWVRANPQCATISEAPPPWATMS--EGSPLW 2984

Query: 545  VIRSQ---FQGDLIPGKLCVKHFSAYVPW 622
            V  S+       L  G      + A  PW
Sbjct: 2985 VTMSEASLLWSTLSKGNPWTTMYEASPPW 3013


>SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 320 PAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVT-PTQSYDTTIEWVPTTPQ 475
           PAA + PG    P +   +   H +  YQS  +   P  +Y ++ +W+P  PQ
Sbjct: 473 PAANTAPGYVLPPVSTLTN-KGHDSTQYQSAQFAQIPPGAYPSSDQWIPAYPQ 524


>SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1816

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
 Frame = -1

Query: 565 LELRPDHPKGTTIVTFITSHHCLLAKYRSILRSCRNPFNCCIIALGWCHIRIALITKCTM 386
           LE+  +   G T++ F T  HC L     +L + +  ++ C+    W H+       C  
Sbjct: 219 LEVAMETHDGNTVIGF-TQRHCALQL--KVLGN-KISYDNCVCNKIWRHV-------CVT 267

Query: 385 WCHMAARCSW-CWRDSWVRHCCRLLSE--TIPGLE*MLNIITRHRIIW 251
           W   A    W  + D  V    RLLS   T+PG   +L+I+ R ++ W
Sbjct: 268 WKSHAG--VWEIYLDGQVIGFGRLLSARLTLPGNNRILSIMPRRKVTW 313


>SB_49922| Best HMM Match : PAN (HMM E-Value=2.1)
          Length = 219

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -1

Query: 427 WCHIRIALITKCTMWCHMAARCSWCWRDSWVRHCCRLLSETIP 299
           W H  +    +C   CH A RC   W  S V   C ++S   P
Sbjct: 165 WFHENVTSSKECAWLCHQATRC-MAW--SLVEDRCVMMSNMPP 204


>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1680

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
 Frame = +2

Query: 296 PGYSLGQQPAAMSYPGITPAPT-APRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTP 472
           P  S   QP     P  TPAPT A     TP         P   PTQ+        PT  
Sbjct: 708 PTLSTAAQPTQAQNPAPTPAPTQAQNPAPTPAPTQAQNPAPTPAPTQAQPPVPSPAPTQA 767

Query: 473 Q 475
           Q
Sbjct: 768 Q 768


>SB_32746| Best HMM Match : Lentiviral_Tat (HMM E-Value=6.8)
          Length = 171

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +1

Query: 172 SPTPRTNLPIALQSCKCSTSWPA*CTTKLSCAW 270
           SP+P        + C     W   CT  LSCAW
Sbjct: 126 SPSPYIRSACGGRVCNWIVKWVFSCTPDLSCAW 158


>SB_29793| Best HMM Match : Trigger_N (HMM E-Value=3.3)
          Length = 533

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +2

Query: 320 PAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQNAS 484
           P+     G  PAP++P+G V+       Q  P        + T+ WV   P  AS
Sbjct: 124 PSKAHAEGEAPAPSSPQGEVS--DKLDPQRTPRTPLGLKAERTVHWVTLNPSTAS 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,790,719
Number of Sequences: 59808
Number of extensions: 574806
Number of successful extensions: 1570
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)