Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7d08
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57921| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_38872| Best HMM Match : Histone (HMM E-Value=3e-31)                 29   3.3  
SB_46577| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)                 27   7.6  

>SB_57921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 470 SSFVTRKFAKKLSSSCVKTLSSTNLCNVNVTLTLFNNACIKKST 339
           SS ++  FA+  + +CV  L   NLC+   T  + +  CI+  T
Sbjct: 39  SSLLSSYFARARTKNCVFLLHGRNLCSGQNTTPIMDAWCIRNYT 82


>SB_38872| Best HMM Match : Histone (HMM E-Value=3e-31)
          Length = 242

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 199 EQVYPDKDFSLKLKRVINMFLNDEIEN--DKIYKLVETVDSSNKLSRRQVDFLIHALLNN 372
           +QV+PD   S K   ++N F+ND  E    +  +L    +  + +S R+V   +  LL  
Sbjct: 43  KQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAH-YNKRSTISSREVQTAVRLLLPA 101

Query: 373 VSVTF 387
              TF
Sbjct: 102 GKTTF 106


>SB_46577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 258 KHVNYSFKF--KRKILVRIDLFAQPIAKSGFDHGHLSGERCRFDQF 127
           +HV Y  KF  +R    R+  F + +A+  +DH  LSG  C  +QF
Sbjct: 178 EHVQYEHKFDGQRSNGDRMRTF-KAMARVNYDHERLSGGSCDTEQF 222


>SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +1

Query: 235 LKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHAL 363
           L+R+  +F  + I N+++YK   +    N++  R++ +L H L
Sbjct: 12  LRRICGIFWPNVISNEELYKNTSSSSLVNQIRYRRLKWLGHVL 54


>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
          Length = 1122

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 19/56 (33%), Positives = 31/56 (55%)
 Frame = +1

Query: 280 DKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSFLA 447
           +K+ +++E     N  S R+ DFL++AL + +  +    RFV   V+T   LS LA
Sbjct: 35  NKLAQMIEGTALHNTESIRKSDFLVYALCSTLLSSHPACRFV---VVTLHTLSCLA 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,912,264
Number of Sequences: 59808
Number of extensions: 239533
Number of successful extensions: 616
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)