Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7d07
         (717 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.46 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.5  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    23   3.3  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.6  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -3

Query: 580 SPSFLKLALKALTFSGSAFTLAPEASTPLPSSSMWK-RRFSSRIIEPAEGLAHAVSTSGP 404
           SP+++K  L   T S S+ T+A    T   +SS+W      S  +E         S+S P
Sbjct: 185 SPNYIKPQLHVSTGSTSSPTIASATYTNSANSSIWSPASIDSFTLEQHRSWC---SSSQP 241

Query: 403 MQSFKN-VTSLFSNF 362
           + S  N  T+ ++N+
Sbjct: 242 VLSTTNSTTNCYNNY 256


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 522 VKADPEKVKAFR 557
           +KADPEK+ A R
Sbjct: 513 IKADPEKISAIR 524


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 84  DSSKLSVLGNFREIFKFLCREIDKINL 4
           DS KLS + N   +   + RE DKI +
Sbjct: 51  DSVKLSKIPNNVNLMDVVAREFDKIQV 77


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 418 KQHVLILQLVQLSYWRIFASTLKRKAKV 501
           K   +  Q ++   WR F + LKR+ ++
Sbjct: 523 KYRKVTFQCLKSIAWRAFLAVLKRRTEI 550


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,364
Number of Sequences: 336
Number of extensions: 3177
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)