Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7d07
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_86| Best HMM Match : PGK (HMM E-Value=0)                           303   1e-82
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.076
SB_59566| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  

>SB_86| Best HMM Match : PGK (HMM E-Value=0)
          Length = 445

 Score =  303 bits (743), Expect = 1e-82
 Identities = 146/202 (72%), Positives = 167/202 (82%)
 Frame = +3

Query: 111 MALNKLSIDALNLTGKRVLMRVDFNVPLKEGVITNNQRIVAALDSVKYALDKGAKSVVLM 290
           MALNKL I  +++  KRVLMRVDFNVPLK   ITNNQRIVAAL S+K+ L+KGAKSVVLM
Sbjct: 1   MALNKLGIADVDVKDKRVLMRVDFNVPLKGKEITNNQRIVAALPSIKHCLEKGAKSVVLM 60

Query: 291 SHLGRPDGQVNLKYTLKPVAEELKKLLNKDVTFLNDCIGPEVETACANPSAGSIILLENL 470
           SHLGRPDG+V  KY++ PVA ELKKLL KDV FL  C+GPEV+ ACANP+ GS+ILLENL
Sbjct: 61  SHLGRPDGRVQEKYSMAPVANELKKLLGKDVKFLPSCVGPEVQAACANPAPGSVILLENL 120

Query: 471 RFHIEEEGKGVDASGAKVKADPEKVKAFRASLRKLGDVYINDAFGTAHRAHSSMVGEGFE 650
           RFH+EEEGKGVDA G KVKA+ + VK FR SL  LGD+Y+NDAFGTAHRAHSSMVG    
Sbjct: 121 RFHLEEEGKGVDADGNKVKANSDAVKVFRESLATLGDIYVNDAFGTAHRAHSSMVGIDHP 180

Query: 651 QRASGFLLKKELQYFAKALHEP 716
           ++A+GFLLKKEL YFAKAL  P
Sbjct: 181 KKAAGFLLKKELDYFAKALESP 202


>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1931

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
 Frame = +3

Query: 240  DSVKYALDKGAKSVVLMSHLGRP--DGQVNLKYTLKPVAEELKKLLNKDVTFLNDCIGPE 413
            + ++ AL+K  + V + + +      G  N    L+   + LK+L N+D + LND +  E
Sbjct: 1703 EDIRNALNKTREIVDMAARVANTLKSGTANQSMLLEEAEKILKELQNRDFSALNDTVNME 1762

Query: 414  VETACANPSAGSIILLENL 470
            ++T     S  +++L E+L
Sbjct: 1763 MKTIRGMQSLATMLLNESL 1781


>SB_59566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +3

Query: 60  LRQKASKNQKEFNFLLRMALNKLSIDALNLTGKRVLMRVDFNVPLKEGVITNNQRIVAAL 239
           L  +   N+     LL +    L++D + LT  RVL+ +D  +   + V+    R++  L
Sbjct: 55  LSNEVDNNKPSKRVLLTLDRVLLTLDRVLLTLDRVLLTLDRVLLTLDRVLLTLHRVLLTL 114

Query: 240 DSVKYALDK 266
           D V   LD+
Sbjct: 115 DRVLLTLDR 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,770,504
Number of Sequences: 59808
Number of extensions: 362031
Number of successful extensions: 1002
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)