Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7d06
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336...    28   5.3  
03_06_0635 + 35210755-35210855,35210938-35211088,35211171-352113...    28   7.0  
10_08_0742 + 20244984-20247008                                         27   9.2  
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692     27   9.2  
03_05_1070 + 30125131-30127029                                         27   9.2  

>01_01_0453 -
           3361460-3361549,3361660-3361846,3362038-3362139,
           3362239-3362306,3362976-3363175,3363253-3363595,
           3363837-3363893,3364011-3364727,3364805-3365007,
           3365171-3365297
          Length = 697

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 466 LEHNYTREIVRLMTTLPVPSNRNTLS 543
           L+H  TR+++ L    PV +N+N LS
Sbjct: 147 LDHRQTRDLISLFLPAPVRANQNKLS 172


>03_06_0635 +
           35210755-35210855,35210938-35211088,35211171-35211341,
           35211864-35212043,35213174-35213303,35213580-35213749
          Length = 300

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -1

Query: 370 QTPKSRIRAVMTASMRMITLVF--SRSTSRHISKARGFIPILILSTRSEVVNKKK*ITQN 197
           ++P+ ++  +M+    +  L+   S S  R +S A  F+PILI  T  E V +    +  
Sbjct: 154 KSPREKLSCIMSCCQVINNLLLNVSMSNDRTLSGADDFLPILIYITIKESVFQTHMESAR 213

Query: 196 WPNYISL 176
             N+IS+
Sbjct: 214 LGNHISV 220


>10_08_0742 + 20244984-20247008
          Length = 674

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 617 ASPPSTETVAXGGKNNCAWRSVQECDSVLRLDGTGKVVINLTISRV 480
           + P +  T   GGK N    S Q   + +  DG+ K ++N+TI+ V
Sbjct: 174 SEPAAYFTDGGGGKRNLTLESAQPIQAWVDYDGSAK-ILNVTIAPV 218


>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
          Length = 455

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 357 DLGVCCNYHRRYRAVCRKSKTP 422
           DL  C +YHRR++     SKTP
Sbjct: 126 DLSKCRDYHRRHKVCEAHSKTP 147


>03_05_1070 + 30125131-30127029
          Length = 632

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -3

Query: 590 AXGGKNNCAWRSVQECDS-VLRLD 522
           A GG+   AWRS    DS VLRLD
Sbjct: 521 AGGGRGEAAWRSTATQDSQVLRLD 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,805,988
Number of Sequences: 37544
Number of extensions: 291976
Number of successful extensions: 750
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)