Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7d06
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.25 
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_14622| Best HMM Match : DUF1441 (HMM E-Value=1.6)                   29   4.1  
SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)                  28   5.4  
SB_40570| Best HMM Match : DUF1602 (HMM E-Value=3.7)                   27   9.4  
SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)      27   9.4  

>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 469 EHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQL 573
           EH +T +I +L  T+P     NTL   C +RHA L
Sbjct: 545 EHAFTNDIEQLPFTIPRLEMLNTLLRECIDRHAPL 579


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -2

Query: 123 LKLHKSQTFFN-KNRTHERHAQKRGKGAARDRFYSFSAGSRS 1
           L+  +S+T  + ++R+ +R   +RGK  +R R  S+S+ SRS
Sbjct: 635 LRRSRSRTSLSSRSRSRDRGGSRRGKRRSRSRSSSYSSRSRS 676


>SB_14622| Best HMM Match : DUF1441 (HMM E-Value=1.6)
          Length = 426

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 309 TSVIILIDAVMTARILDLGVCCNYHRRYRAVCRKSKTPTPQDVSWHSSVEP 461
           T ++IL+D     ++LD G+   +  R + + +K+      DVS    VEP
Sbjct: 332 TKILILLDVTPDQKMLDEGLAREFVNRIQKLRKKAGLQPVDDVSIVYEVEP 382


>SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)
          Length = 1167

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 367  TPKSRIRAVMTASMRMITLVFSRSTSRHISKARGFIPILILST 239
            T  SR+ AVM   +  ++L  ++  S+H S A  F  +L+L T
Sbjct: 901  TTGSRLSAVMCRMIAGLSLFTTQGMSQHSSTATTFTRLLVLDT 943


>SB_40570| Best HMM Match : DUF1602 (HMM E-Value=3.7)
          Length = 152

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 514 VKWSLISRSHEYNYVLNNGSTELCQETS 431
           V+W +I  S  Y+     GS +LC +TS
Sbjct: 58  VQWIIIPLSSHYSERTGKGSAQLCSQTS 85


>SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)
          Length = 851

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 415 RHLRRRMSPGIVPWNRCLEHNYTREIVRLMTTLPVPSNRNTLSHSCTER 561
           RHL   ++ GI P +   +H     ++RLM  LP    +   + SC E+
Sbjct: 443 RHLVVSVAAGI-PLSSFSKHYGLERVIRLMPNLPCSVKQGAAAFSCGEK 490


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,775,109
Number of Sequences: 59808
Number of extensions: 367778
Number of successful extensions: 1001
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)