Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7d02
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...   252   5e-68
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    28   1.1  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    27   3.5  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    26   4.6  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   8.0  

>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score =  252 bits (616), Expect = 5e-68
 Identities = 125/209 (59%), Positives = 150/209 (71%), Gaps = 3/209 (1%)
 Frame = +3

Query: 90  AYQKLQEYYNVNNTKINMLQLFQQDRERFEKFSLCIP--TPNDGDILLDYSKNRINSDVF 263
           A+Q +Q +Y      + + +LF +D  RFEKFS         DG IL D+SKN I  +  
Sbjct: 11  AWQAVQTHYESVGKHLVLKELFAKDSSRFEKFSFTFNGLKEEDGPILFDFSKNLITEETV 70

Query: 264 KLLLDLAKSRNVEQARDAMFSGQKINFTEDRAVLHIALRNRQNKPILVNGKDVSTDVNAV 443
           +LL+ LAK  NVE  RDA+F+G+ INFTEDRAV H ALRN   KP+ VNG+DV   V  V
Sbjct: 71  ELLVKLAKEANVEGLRDALFAGEHINFTEDRAVFHPALRNVSEKPMKVNGQDVMPGVRKV 130

Query: 444 LEHMKEFSDQVVSGQWKGYTGKAITDVINIGIGGSDLGPLMVTEALKPYA-NHLKVHFVS 620
           L HMKEFSD V SG WKGYTGK I  ++N+GIGGSDLGP+MVTEALKPY   +L++HFVS
Sbjct: 131 LRHMKEFSDAVRSGAWKGYTGKPIKSIVNVGIGGSDLGPVMVTEALKPYGQENLELHFVS 190

Query: 621 NIDGTHLAEVLKKLNPETALFIIASKTFT 707
           NIDGTHLAE LKK +PET LF+IASKTFT
Sbjct: 191 NIDGTHLAEALKKCDPETTLFLIASKTFT 219


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
 Frame = +3

Query: 375 LRNRQN--KPILVNGKDVSTDVNAVLEHMKEFSDQVVSGQWKGYTGKAITDVINIGIGGS 548
           + NR N  KP+ +  KD   +     EH K+  D  +SG      G  +++ IN      
Sbjct: 668 ITNRLNAKKPLFIESKDFGDNPLDTFEHYKQSVDAGLSGMLFSVIGGRLSEGINF---SD 724

Query: 549 DLGPLMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLNPETA 677
            LG  ++   + P+ N   V + + +         K +N + A
Sbjct: 725 KLGRAVMVVGM-PFPNSQDVEWQAKVSYVEEKAKEKGINAKQA 766


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 12  LRHSICKAPVQSIVTMEPKINLKQDAAYQKLQEYY 116
           L+ ++C AP  SI   E +IN        K +EY+
Sbjct: 321 LQQALCSAPTSSIAYHEEEINPDNTIYRAKWEEYF 355


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 3   SIGLRHSICKAPVQSIVTMEPKINLKQDAAYQKLQEYY 116
           SI L  S  +   +SI+++E K+N  + +  +KLQ+ Y
Sbjct: 247 SIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDEY 284


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 345 TEDRAVLHIALRNRQNKPILVNGKDVSTDVNAVLEHMKEFS 467
           T     LH+A R  Q KP   N     + V + ++  K FS
Sbjct: 173 TNSNIKLHLAARKYQTKPEKFNENSSISQVTSAIKATKAFS 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,418
Number of Sequences: 5004
Number of extensions: 57316
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)