Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7d02
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19976| Best HMM Match : PGI (HMM E-Value=0)                        196   1e-50
SB_37337| Best HMM Match : PGI (HMM E-Value=0)                         86   3e-17
SB_13681| Best HMM Match : Guanylate_cyc (HMM E-Value=2.8e-27)         29   2.8  
SB_46637| Best HMM Match : Toxin_16 (HMM E-Value=1.6)                  29   4.9  
SB_15601| Best HMM Match : Toxin_16 (HMM E-Value=0.24)                 29   4.9  

>SB_19976| Best HMM Match : PGI (HMM E-Value=0)
          Length = 664

 Score =  196 bits (478), Expect = 1e-50
 Identities = 97/189 (51%), Positives = 130/189 (68%)
 Frame = +3

Query: 141 MLQLFQQDRERFEKFSLCIPTPNDGDILLDYSKNRINSDVFKLLLDLAKSRNVEQARDAM 320
           M ++F QD ER EKF +        D ++DYSKN+I  +   LL+DLA   N+++A +  
Sbjct: 1   MKEMFFQDSERVEKFHI-----EWEDFVIDYSKNKITEETKGLLIDLANEINLKEAIEDY 55

Query: 321 FSGQKINFTEDRAVLHIALRNRQNKPILVNGKDVSTDVNAVLEHMKEFSDQVVSGQWKGY 500
           FSG+ IN TE+RAVLH ALR   N  + V GK++  ++  V + +  F++ +VSG  KGY
Sbjct: 56  FSGEIINKTENRAVLHTALRADVNDEVYVEGKNIIPEIFEVKKKIDFFTNDIVSGIRKGY 115

Query: 501 TGKAITDVINIGIGGSDLGPLMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLNPETAL 680
           T K  TDV+NIGIGGSDLGP M+ E L+ Y NHL +HFVSN+DG H+ E+LKK+NPET L
Sbjct: 116 TNKPFTDVVNIGIGGSDLGPAMIVEGLEYYKNHLNLHFVSNVDGDHVNEILKKINPETTL 175

Query: 681 FIIASKTFT 707
           F+I SKTFT
Sbjct: 176 FVIVSKTFT 184


>SB_37337| Best HMM Match : PGI (HMM E-Value=0)
          Length = 391

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 43/58 (74%), Positives = 48/58 (82%), Gaps = 1/58 (1%)
 Frame = +3

Query: 537 IGGSDLGPLMVTEALKPYANH-LKVHFVSNIDGTHLAEVLKKLNPETALFIIASKTFT 707
           + G D GPLMVTEAL+PY    L VHFVSNIDGTHLA+ L +LNPET+LFIIASKTFT
Sbjct: 102 VDGKD-GPLMVTEALQPYGKKGLNVHFVSNIDGTHLAKTLAELNPETSLFIIASKTFT 158



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 48/126 (38%), Positives = 66/126 (52%)
 Frame = +3

Query: 72  NLKQDAAYQKLQEYYNVNNTKINMLQLFQQDRERFEKFSLCIPTPNDGDILLDYSKNRIN 251
           +L     +  L++++      ++M +LFQ+D  RFEKFS  + T +DG +L+DYSKN + 
Sbjct: 15  SLTSSPEWAALEQHHKSTALALHMRKLFQEDANRFEKFSTFLDT-SDGRLLVDYSKNIVT 73

Query: 252 SDVFKLLLDLAKSRNVEQARDAMFSGQKINFTEDRAVLHIALRNRQNKPILVNGKDVSTD 431
            +  KLL                       F  DRAVLHIALRNR N PILV+GKD    
Sbjct: 74  EETMKLL-----------------------FRLDRAVLHIALRNRSNTPILVDGKDGPLM 110

Query: 432 VNAVLE 449
           V   L+
Sbjct: 111 VTEALQ 116


>SB_13681| Best HMM Match : Guanylate_cyc (HMM E-Value=2.8e-27)
          Length = 517

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
 Frame = +3

Query: 189 LCIPTPNDGDILLDYSKNRINSDV-FKLLLDLAKSRNVEQARDAMFSGQKINFTE----D 353
           LCI +PN   +  D +K R+N+D   K +++  + R   Q+R+ +F     +F      +
Sbjct: 121 LCISSPNSTPVGKDLNKARLNTDKNIKSIINWPEGRQSLQSRE-IFIRDVTDFRSRGEVE 179

Query: 354 RAVLHIALRNRQN 392
           R VL+I ++   N
Sbjct: 180 RCVLNITIQETLN 192


>SB_46637| Best HMM Match : Toxin_16 (HMM E-Value=1.6)
          Length = 131

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 456 KEFSDQVVSGQWKGYTGKAITDVINIGIGGSDLGPLMVT 572
           +E   Q+V+G  + +T   +T   + G  G ++GP MVT
Sbjct: 68  EEVGQQMVTGDDRAFTCGPVTCCRSTGADGEEVGPQMVT 106


>SB_15601| Best HMM Match : Toxin_16 (HMM E-Value=0.24)
          Length = 358

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 456 KEFSDQVVSGQWKGYTGKAITDVINIGIGGSDLGPLMVT 572
           +E   Q+V+G  + +T   +T   + G  G ++GP MVT
Sbjct: 295 EEVGQQMVTGDDRAFTCGPVTCCRSTGADGEEVGPQMVT 333


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,844,249
Number of Sequences: 59808
Number of extensions: 424189
Number of successful extensions: 1051
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)