Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7c19
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    26   5.4  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    26   7.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.5  

>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = -2

Query: 183 TGVTIPYHNWCASTPTTFYKIVNVWTTTLQEFFLLKMEIHLLQMLFH 43
           T   +P+  WC +TP  F+ +V ++  +       K+++     L H
Sbjct: 199 THENLPWGEWCGNTPFAFHPLVVLFVLSGIAMTSKKLKVPKSTFLLH 245


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 638 CFPVLNYGNYSQKANICHSSAILNSL 715
           CF   NYG  S ++N CH  A+ + L
Sbjct: 242 CFS--NYGGSSLRSNFCHEQAVRHLL 265


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +2

Query: 614  RNKLI*NICFPVLNYGNYSQKANICHSSAILNSLQQNLLKHFGYIS 751
            RN+ I +I  P+     Y    NI  +      L QNLL+ F  IS
Sbjct: 2098 RNRAISSISLPLRTKNIYVNSDNISETFPYTYILPQNLLRKFVTIS 2143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,394,721
Number of Sequences: 5004
Number of extensions: 73062
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)