Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7c19
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0169 - 26428330-26429367,26429489-26429640,26429757-26430333     31   1.4  
01_05_0578 - 23389066-23389302,23389428-23389571,23389721-23390722     29   3.2  
01_01_0510 - 3723983-3724416,3724895-3725766,3725797-3726791,372...    29   5.7  
10_02_0063 - 4849637-4850640,4854341-4854596,4854666-4855340           28   7.5  

>02_05_0169 - 26428330-26429367,26429489-26429640,26429757-26430333
          Length = 588

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +1

Query: 4   EENIEHAGVIVETVEKHLEKVNFHF*QKKLLKSCCPHVHYFIESGRC 144
           EE    A V  + V  HLE  N  F +K L      H+H +   G C
Sbjct: 140 EEYFLKASVAGDAVSSHLEASNDEFKRKPLATLLNSHIHIYCTCGHC 186


>01_05_0578 - 23389066-23389302,23389428-23389571,23389721-23390722
          Length = 460

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 409 VNFLRKEIGSCACVNFQKHKLIFYNL 486
           V+F  K +GS  CV+ Q  K  FYNL
Sbjct: 399 VDFWMKNLGSILCVHSQLTKFTFYNL 424


>01_01_0510 -
           3723983-3724416,3724895-3725766,3725797-3726791,
           3727332-3727439
          Length = 802

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -1

Query: 649 YRKANVSNEFIP*VHISAGKIYHSVQTFKEAPLCLHIPQHLI---RQNFYTELLLI 491
           Y+ A+V + FIP + ++ GK Y   + +++    +   QHLI     + YTE+ L+
Sbjct: 188 YQDAHVPDNFIPKIPLADGKNYEPHRCWEDIFDAISNAQHLIYITGWSVYTEITLV 243


>10_02_0063 - 4849637-4850640,4854341-4854596,4854666-4855340
          Length = 644

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = -1

Query: 235 GDACSCLTGYKRGLTKLNRCHHSLSQLVCVNTDHFL*NSERVDNNSSRVFFVKNG 71
           G  C+C  GY       N CH ++  L  V    FL    R +    R FF KNG
Sbjct: 290 GYICNCSKGYDGNPYIPNGCHGAIGGLFIVAVLVFLALVHR-EKRKMREFFEKNG 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,029,787
Number of Sequences: 37544
Number of extensions: 365340
Number of successful extensions: 602
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)