Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7c18
         (130 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P17704 Cluster: 40S ribosomal protein S17; n=63; Eukary...    36   0.13 
UniRef50_UPI00005A5879 Cluster: PREDICTED: similar to 40S riboso...    32   2.2  
UniRef50_Q4TBI5 Cluster: Chromosome 13 SCAF7124, whole genome sh...    32   2.2  
UniRef50_P08708 Cluster: 40S ribosomal protein S17; n=105; Eukar...    32   2.2  

>UniRef50_P17704 Cluster: 40S ribosomal protein S17; n=63;
           Eukaryota|Rep: 40S ribosomal protein S17 - Drosophila
           melanogaster (Fruit fly)
          Length = 131

 Score = 36.3 bits (80), Expect = 0.13
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = +2

Query: 5   DXXXMLKMLDFNNXNGLQLTQPAT 76
           D   MLK+LDF+N  GLQLTQP T
Sbjct: 101 DTKEMLKLLDFHNIRGLQLTQPNT 124


>UniRef50_UPI00005A5879 Cluster: PREDICTED: similar to 40S ribosomal
           protein S17; n=1; Canis lupus familiaris|Rep: PREDICTED:
           similar to 40S ribosomal protein S17 - Canis familiaris
          Length = 177

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 2   PDXXXMLKMLDFNNXNGLQLTQP 70
           PD   MLK+LDF + + LQ+TQP
Sbjct: 142 PDTQEMLKLLDFGSLSNLQVTQP 164


>UniRef50_Q4TBI5 Cluster: Chromosome 13 SCAF7124, whole genome
           shotgun sequence; n=2; Tetraodon nigroviridis|Rep:
           Chromosome 13 SCAF7124, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 372

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 2   PDXXXMLKMLDFNNXNGLQLTQP 70
           PD   MLK+LDF + + LQ+TQP
Sbjct: 339 PDTKEMLKLLDFGSLSNLQVTQP 361


>UniRef50_P08708 Cluster: 40S ribosomal protein S17; n=105;
           Eukaryota|Rep: 40S ribosomal protein S17 - Homo sapiens
           (Human)
          Length = 135

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 2   PDXXXMLKMLDFNNXNGLQLTQP 70
           PD   MLK+LDF + + LQ+TQP
Sbjct: 100 PDTKEMLKLLDFGSLSNLQVTQP 122


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,873,191
Number of Sequences: 1657284
Number of extensions: 946909
Number of successful extensions: 2601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2601
length of database: 575,637,011
effective HSP length: 23
effective length of database: 537,519,479
effective search space used: 10212870101
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)