Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7c18
         (130 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       24   2.4  
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl...    24   3.2  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    23   7.3  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    23   7.3  

>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 32  DFNNXNGLQLTQPATQGGYG 91
           DF + + L  TQP+  GG G
Sbjct: 143 DFQSKDSLSTTQPSVSGGNG 162


>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
           endonuclease Cce1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 258

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 79  GWLWWQA*LINYKN 120
           GW+ WQA L +Y+N
Sbjct: 237 GWMRWQAQLKHYRN 250


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 124 FYSYNLLITPATIATLGS 71
           +YS + +I P T++T GS
Sbjct: 510 YYSNSSIIVPTTVSTSGS 527


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 76  PGWLWWQA*LINYKNKK 126
           PG+ WW A L+  K  K
Sbjct: 61  PGYPWWPALLLRRKETK 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 410,320
Number of Sequences: 5004
Number of extensions: 3707
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 2,362,478
effective HSP length: 23
effective length of database: 2,247,386
effective search space used: 42700334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)