Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7c18
         (130 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0659 - 35345095-35345135,35345982-35347365                       27   2.8  
03_03_0174 - 15124079-15124115,15124198-15124302,15124333-151249...    26   4.9  

>03_06_0659 - 35345095-35345135,35345982-35347365
          Length = 474

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 52  PATNTASYPGWLW 90
           PATN A YPG LW
Sbjct: 370 PATNDAPYPGKLW 382


>03_03_0174 -
           15124079-15124115,15124198-15124302,15124333-15124942,
           15125081-15125462
          Length = 377

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 25  DAGLQQYXWPATNTASYPGWLWW 93
           D  L+ Y W  ++  +Y G  WW
Sbjct: 162 DHELRDYHWEVSSILTYRGRFWW 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,845
Number of Sequences: 37544
Number of extensions: 25583
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 14,793,348
effective HSP length: 23
effective length of database: 13,929,836
effective search space used: 264666884
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)