Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7c18
         (130 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   0.25 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    19   5.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    19   5.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    19   5.5  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    18   9.6  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    18   9.6  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    18   9.6  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 0.25
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 49  WPATNTASYPGWLWWQA 99
           W  ++  S+P  +WW+A
Sbjct: 171 WICSSAISFPAIVWWRA 187


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = -2

Query: 78  WVAGCVSCRP 49
           W   CV+C P
Sbjct: 385 WQMSCVACSP 394


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 5/8 (62%), Positives = 5/8 (62%)
 Frame = +1

Query: 67  ASYPGWLW 90
           A YP W W
Sbjct: 103 APYPDWTW 110


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 56  QLTQPATQGGYG 91
           +L+QP +  GYG
Sbjct: 154 ELSQPGSLNGYG 165


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
          precursor protein.
          Length = 223

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -3

Query: 98 ACHHSHPG 75
          AC HS PG
Sbjct: 15 ACTHSFPG 22


>AY939856-1|AAX33236.1|  223|Apis mellifera venom
          carbohydrate-rich protein precursor protein.
          Length = 223

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -3

Query: 98 ACHHSHPG 75
          AC HS PG
Sbjct: 15 ACTHSFPG 22


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2
          protein.
          Length = 223

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -3

Query: 98 ACHHSHPG 75
          AC HS PG
Sbjct: 15 ACTHSFPG 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,312
Number of Sequences: 438
Number of extensions: 362
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 23
effective length of database: 136,269
effective search space used:  2589111
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)