Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7c08
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    32   0.10 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.31 
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       29   0.72 
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   2.2  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    27   2.9  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    27   2.9  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    27   2.9  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.8  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    27   3.8  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    26   5.1  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    26   6.7  
SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr ...    25   8.9  

>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
 Frame = +2

Query: 293 HAAPDSAPDGDVCDCLNTVGC-DCLNTVGCDCLKTVGCDC 409
           H     +  G  CDC +  GC DC  + GC       C C
Sbjct: 3   HTTQCKSKQGKPCDCQSKCGCQDCKESCGCKSSAVDNCKC 42


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = -2

Query: 402 QPTVFKQSQPTVFKQSQPTVFKQSQ 328
           QPT F Q QPT F   QP  F Q Q
Sbjct: 126 QPTGFVQPQPTGFMSQQPASFMQPQ 150



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -2

Query: 423 PAVFKQSQPTVFKQSQPTVFKQSQPT 346
           P  F Q QPT F   QP  F Q Q T
Sbjct: 127 PTGFVQPQPTGFMSQQPASFMQPQRT 152


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -2

Query: 408 QSQPTVFKQSQPTVFKQSQPTVFKQSQ 328
           Q QPT F Q QPT F + Q T F Q Q
Sbjct: 310 QPQPTGFLQQQPTGFIRPQNTGFVQPQ 336


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -3

Query: 179 DPLLSQEDDTIESVDRASQQYQNSIASETAAQR---ALQRGLDLESQLMS 39
           DP L Q+    ++  +A+QQ     A + AAQ+   A Q+  ++E Q M+
Sbjct: 326 DPTLDQQLAAQQAAQQAAQQQAELAAQQAAAQQAQLAAQQAAEMERQRMA 375


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 84  LRSCLRRNAILVLLRSTIHTFNGVIFLT*QRIVIANVNLTVHVIRDTLTMV 236
           LRSC      +VL    IH   G I  T +R+V A+  L   +I++ + +V
Sbjct: 681 LRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLV 731


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 215 YHVHGQVNISNDDPLLSQEDDTIESVD 135
           +H  G    S  DP+L +  DT++S++
Sbjct: 351 FHTSGSSKFSEQDPILIEAKDTLDSLE 377


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 84  LRSCLRRNAILVLLRSTIHTFNGVIFLT*QRIVIANVNLTVHVIRDTLTMV 236
           LRSC      +VL    IH   G I  T +R+V A+  L   +I++ + +V
Sbjct: 681 LRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLV 731


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -3

Query: 611 INSINTVIVLLVSTVQ-ASQPNEQYRYQPAMSRQINA-VTP 495
           +NS+N  I+ +   +Q +S  N+QY++      +++A +TP
Sbjct: 659 LNSLNNSILQMHQNLQNSSNTNDQYKFDSVQENELHANITP 699


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 350 GCDCLNTVGCDCLKTVGCDCL 412
           GC+C +  GCD      C+CL
Sbjct: 259 GCNCSSLGGCDLNNPSRCECL 279



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 329 CDCLNTVGCDCLNTVGCDCL 388
           C+C +  GCD  N   C+CL
Sbjct: 260 CNCSSLGGCDLNNPSRCECL 279


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 22  DLGEISLISCDSRSKPRC 75
           DLG IS+IS DS++  RC
Sbjct: 620 DLGAISMISSDSQAMGRC 637


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -3

Query: 257 NEPLTRTYHSQGVTYHVHGQVNISNDDPLL--SQEDDTIESVDRASQQ 120
           N+P  R  H      +    VN S DD LL  S  D T +  D ++QQ
Sbjct: 166 NQPSARRIHGWLAHNNAIFSVNFSKDDSLLATSSGDQTSKVFDLSTQQ 213


>SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 689 FFALQKSSFLPDKFPYHYCLISRTLLINS 603
           F+ +   S +  K+P  YC+I   LLIN+
Sbjct: 21  FYPIFMLSMIARKYPCPYCMIILGLLINT 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,929
Number of Sequences: 5004
Number of extensions: 41260
Number of successful extensions: 123
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)