Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7c07
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13287| Best HMM Match : Cu2_monoox_C (HMM E-Value=6.6) 36 0.031
SB_57242| Best HMM Match : Extensin_2 (HMM E-Value=2.4) 35 0.054
SB_30652| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_22749| Best HMM Match : CITED (HMM E-Value=8.7) 33 0.29
SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_17271| Best HMM Match : Ank (HMM E-Value=1.7e-10) 29 3.6
SB_31204| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_33311| Best HMM Match : RIO1 (HMM E-Value=0) 28 6.2
SB_22282| Best HMM Match : 7tm_2 (HMM E-Value=9.5e-09) 28 8.3
SB_16273| Best HMM Match : SWIM (HMM E-Value=0.02) 28 8.3
SB_9116| Best HMM Match : Methyltransf_4 (HMM E-Value=0) 28 8.3
>SB_13287| Best HMM Match : Cu2_monoox_C (HMM E-Value=6.6)
Length = 237
Score = 35.9 bits (79), Expect = 0.031
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +1
Query: 394 QQGNNWNSRLRKYQYTNHPSVQGPWTPFT---FKDPELNTAELPDVRFGSNNRLPATATE 564
+ G W++ L +Q T ++ GP+ P++ +K P ++ P S+N P T
Sbjct: 52 RSGTEWDAYLEDFQNTEEMTLPGPYDPYSMEVYKQPIVHLKNFPGFHAASSNPFPHNHTM 111
Query: 565 QLRLMFEKQKLDE 603
L F Q+LD+
Sbjct: 112 FLANAF-GQRLDQ 123
>SB_57242| Best HMM Match : Extensin_2 (HMM E-Value=2.4)
Length = 308
Score = 35.1 bits (77), Expect = 0.054
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 351 NPRGDRKMGRIVPNSTRQQLELETPQVPVHEPPLG-PRTLDSV 476
+PR GR++P TRQ E TP V H PLG P DS+
Sbjct: 266 DPRIPYSFGRVLPRPTRQTRESRTPLVVSHLDPLGRPENPDSL 308
Score = 33.9 bits (74), Expect = 0.13
Identities = 27/70 (38%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Frame = +3
Query: 351 NPRGDRKMGRIVPNSTRQQLELETPQVPVHEPPLG-PRT-------LDSVHVQGPRIEH- 503
+PR GR+ P TRQ E TP V H PLG P L S H PRI +
Sbjct: 213 DPRIPYSFGRVSPRPTRQTRESRTPLVVSHLDPLGSPENPVLLWSCLTSTHSADPRIPYS 272
Query: 504 -GRTTRREIR 530
GR R R
Sbjct: 273 FGRVLPRPTR 282
Score = 33.5 bits (73), Expect = 0.17
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Frame = +3
Query: 351 NPRGDRKMGRIVPNSTRQQLELETPQVPVHEPPLG-PRT-------LDSVHVQGPRIEH- 503
+PR GR++P TRQ E TP V + PLG P L S H PRI +
Sbjct: 160 DPRIPYSFGRVLPRPTRQTRESRTPLVVSYLDPLGRPENPVLLWSCLTSTHSADPRIPYS 219
Query: 504 -GRTTRREIR 530
GR + R R
Sbjct: 220 FGRVSPRPTR 229
Score = 33.1 bits (72), Expect = 0.22
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Frame = +3
Query: 351 NPRGDRKMGRIVPNSTRQQLELETPQVPVHEPPLG-PRT-------LDSVHVQGPRIEH- 503
+PR GR++P TRQ E TP V + PLG P L S H PRI +
Sbjct: 54 DPRTPYSFGRVLPRPTRQTRESRTPLVLSYLDPLGRPENPVLLWSCLTSTHSADPRIPYS 113
Query: 504 -GRTTRREIR 530
GR R R
Sbjct: 114 FGRVLPRPTR 123
Score = 32.7 bits (71), Expect = 0.29
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Frame = +3
Query: 351 NPRGDRKMGRIVPNSTRQQLELETPQVPVHEPPLG-PRT-------LDSVHVQGPRIEH- 503
+PR GR++P TRQ E TP V + PLG P L S H PRI +
Sbjct: 107 DPRIPYSFGRVLPRPTRQTRESRTPLVVSYLDPLGRPENPVLLWSCLTSTHSADPRIPYS 166
Query: 504 -GRTTRREIR 530
GR R R
Sbjct: 167 FGRVLPRPTR 176
>SB_30652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 199
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +3
Query: 84 PIFKIGVRPCALEKWRRTIRVSIAENSLQVL-QIQRSQPWYER 209
P+ +IGVRPC ++ R + + I E+ Q L QI+ + P Y+R
Sbjct: 159 PLTRIGVRPCGRDE--RGVGLDIRESEYQELNQIEATDPCYQR 199
>SB_22749| Best HMM Match : CITED (HMM E-Value=8.7)
Length = 227
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +3
Query: 84 PIFKIGVRPCALEKWRRTIRVSIAENSLQVL-QIQRSQPWYERL 212
P+ +IGVRPC ++ R + + I E+ Q L Q++ + P Y+R+
Sbjct: 179 PLTRIGVRPCGRDE--RGVGLDIRESEYQELNQVEATDPCYQRV 220
>SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1408
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +3
Query: 84 PIFKIGVRPCALEKWRRTIRVSIAENSLQVL-QIQRSQPWYER 209
P+ +IGVRPC ++ R + + I E+ Q L Q++ + P Y+R
Sbjct: 1368 PLTRIGVRPCGRDE--RGVGLDIRESEYQELNQVEATDPCYQR 1408
>SB_17271| Best HMM Match : Ank (HMM E-Value=1.7e-10)
Length = 548
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 108 PCALEKWRRTIRVSIAENSLQVLQIQRSQPWYE 206
P A+E +RTI VS+ ++ RSQ W E
Sbjct: 293 PVAIEPLKRTISVSVKSERKPTARVFRSQTWRE 325
>SB_31204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -1
Query: 381 FDPFYDLLVGFVVDAHPQSVPVQIFPNYDRPTMS 280
F P +L +G + A P+ P+YD+P ++
Sbjct: 817 FQPSAELTIGSIQKAFPEYASTSTLPSYDKPAVT 850
>SB_33311| Best HMM Match : RIO1 (HMM E-Value=0)
Length = 490
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 7 LCRA*HNITQEFKCKG*NTK*MSANNLFLKSAFVRAPLKNGVGRYVCQLQRIVFKFCKSN 186
L R N+ + FK KG MSA LF+K + PL G ++ Q + CK +
Sbjct: 413 LYRDCRNVVEFFKKKG-VAGVMSAQQLFIKVSEADIPLSEDEGEFLAQYSDV--NDCKLS 469
Query: 187 GASRG-MRDF 213
++ G +RD+
Sbjct: 470 PSTLGTLRDY 479
>SB_22282| Best HMM Match : 7tm_2 (HMM E-Value=9.5e-09)
Length = 712
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = -2
Query: 530 PNLTSGSSAVFNSGSLNVNGVQGPWTEGWFVYWYLRSLEFQLLPC*VRNNSTHFTISSWV 351
P+LT S AV SG + + G VY Y + + ++ L C + NN+T+ T W
Sbjct: 130 PSLTIASKAVI-SGCHSASSQPENLLSGAPVYDYAQGVSYRNLDCALCNNATNVTF--WY 186
Query: 350 L 348
L
Sbjct: 187 L 187
>SB_16273| Best HMM Match : SWIM (HMM E-Value=0.02)
Length = 817
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 211 SLSYHGWLRWICKT*RLFSAIDTRIVLRHFSRAHGRTP 98
SL + W RW+ KT S + I+ R AH TP
Sbjct: 98 SLLFMAWERWVTKTSNGVSNVKEEILSRLRQIAHASTP 135
>SB_9116| Best HMM Match : Methyltransf_4 (HMM E-Value=0)
Length = 301
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Frame = +3
Query: 150 IAENSLQVLQIQRSQPWYERLHRAR------FG*FLKRQPWSGGVFKAT*TSWAGHSWGI 311
I +NSL+++Q+ PW++ H R F +K + GGVF T W ++ +
Sbjct: 130 IPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA-TDWEPYAEHM 188
Query: 312 FERGQIVD 335
E +D
Sbjct: 189 LEVMSSID 196
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,302,240
Number of Sequences: 59808
Number of extensions: 506946
Number of successful extensions: 1547
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1547
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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