Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7c05
(712 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 73 2e-13
Z71181-3|CAA94896.1| 493|Caenorhabditis elegans Hypothetical pr... 35 0.050
Z78545-3|CAB01767.1| 306|Caenorhabditis elegans Hypothetical pr... 31 0.81
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z81494-4|CAB04050.2| 319|Caenorhabditis elegans Hypothetical pr... 29 3.3
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr... 29 4.3
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical pr... 28 5.7
AF067216-10|AAC17519.1| 492|Caenorhabditis elegans Hypothetical... 28 5.7
AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1 ... 28 5.7
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 7.6
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 7.6
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 72.9 bits (171), Expect = 2e-13
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Frame = +2
Query: 146 SWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRK 325
SWA+ VE D P + +G + T + + D + K+V +K+ + V K +A RK
Sbjct: 9 SWAEAVEQDNA---PHIQEGADGTRTETAFT-EVDGVRWKVVTQFKVINKRVPKVVADRK 64
Query: 326 TWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNVIFKCR 505
W KFG + GP ATT VAE+V MQF ++ Q D E +S CR
Sbjct: 65 KWVKFGSCKGEPAGPQVATTYVAEEVDMQFTRNRAGEQILDVQEDKQTAKTTSRE--HCR 122
Query: 506 TCQG-DHLTLYCPFK 547
C+G DH + +CP+K
Sbjct: 123 HCKGNDHWSTHCPYK 137
>Z71181-3|CAA94896.1| 493|Caenorhabditis elegans Hypothetical
protein K07C5.3 protein.
Length = 493
Score = 35.1 bits (77), Expect = 0.050
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 152 ADEVEIDQGVLPPPSEVVE-NGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKT 328
AD I +GV P E+ + NGL V E Y+ND +K +T + +V S K K
Sbjct: 321 ADASIILKGVHPKAPEIFQSNGLDSVIEKYYNNDFEKSAQQKTSSSKNKVAEPSFKKSKR 380
Query: 329 WSKFGDSASD 358
+ D SD
Sbjct: 381 QEESDDEESD 390
>Z78545-3|CAB01767.1| 306|Caenorhabditis elegans Hypothetical
protein M03B6.4 protein.
Length = 306
Score = 31.1 bits (67), Expect = 0.81
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +2
Query: 269 VRTYKIEKRVVSKSIAKRKTWSKFGDSASDKP----GPNPATTNVAE 397
+ YKI +S + KRKT KFGD A D P NP TT+ E
Sbjct: 6 ISQYKINISSLSSPL-KRKTTRKFGDDAYDSPKYFMEGNPTTTSTFE 51
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +2
Query: 155 DEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTY-KIEKRVVSKSIAKRKTW 331
D V+ID+ + +E+V+ +IVT++ + +V I+ Y K+ ++ K IA R+ W
Sbjct: 90 DLVDIDEIIPKTKTEIVDEKEQIVTDF----ERYRVLIINDYKKVSEKHYLKKIADREFW 145
>Z81494-4|CAB04050.2| 319|Caenorhabditis elegans Hypothetical
protein F02E9.3 protein.
Length = 319
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = +2
Query: 155 DEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWS 334
D + + PPS LK + K D +K+ K + K KR+ S++I K WS
Sbjct: 47 DSLRSSKSSSSPPSRNSSLNLKTL---KKDRKSKEGKPKSSSKHGKRMTSRAIHVSKKWS 103
Query: 335 KFGDSASDKPGPNPATTNVAEDV 403
+F + T + ED+
Sbjct: 104 QFNRREDKTDYLDDETMQILEDL 126
>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
protein T19D12.4b protein.
Length = 1015
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 197 EVVENGLKIVTEYKYDNDNKKVKIV 271
+ V+ K+V +YKY NDN +V I+
Sbjct: 394 QYVDFAKKLVAQYKYGNDNTRVGII 418
>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
protein T19D12.4a protein.
Length = 1028
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 197 EVVENGLKIVTEYKYDNDNKKVKIV 271
+ V+ K+V +YKY NDN +V I+
Sbjct: 407 QYVDFAKKLVAQYKYGNDNTRVGII 431
>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
protein C23H4.6 protein.
Length = 1137
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +2
Query: 155 DEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAK----- 319
DEVE+ + V+N KIV + K++ + + +R K+E ++ K IAK
Sbjct: 331 DEVEVQDEEIKESRADVDNLRKIVNDLKHEIKMSESQ-MRRKKVEIMLIRKEIAKAQKQL 389
Query: 320 RKTWSKFG 343
R+ KFG
Sbjct: 390 REALGKFG 397
>Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical
protein F42E11.4 protein.
Length = 250
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +2
Query: 206 ENGLKIVTEYKYDNDNKKV----KIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPN 373
+N K + E K ++ +K + K V+ + ++ +K + + WSK + ++ P
Sbjct: 165 DNKFKKMAEAKKEDGSKNLRNNLKTVKKESVFTQIANKKKSDKPEWSKKKEEKKEESAPE 224
Query: 374 PATTNVAEDVFMQFITSKEESQRPDD 451
P V E+ +EE + ++
Sbjct: 225 PVIEPVEEEETAASEGEEEEEEADEE 250
>AF067216-10|AAC17519.1| 492|Caenorhabditis elegans Hypothetical
protein C35E7.3 protein.
Length = 492
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -1
Query: 526 QMVSLTCTTLKDNIAGWWLKTIKLP 452
Q V TC K + G LKTIKLP
Sbjct: 91 QRVQCTCCEYKKELVGCHLKTIKLP 115
>AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1
protein.
Length = 250
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +2
Query: 206 ENGLKIVTEYKYDNDNKKV----KIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPN 373
+N K + E K ++ +K + K V+ + ++ +K + + WSK + ++ P
Sbjct: 165 DNKFKKMAEAKKEDGSKNLRNNLKTVKKESVFTQIANKKKSDKPEWSKKKEEKKEESAPE 224
Query: 374 PATTNVAEDVFMQFITSKEESQRPDD 451
P V E+ +EE + ++
Sbjct: 225 PVIEPVEEEETAASEGEEEEEEADEE 250
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 17 PAKQVEHLIKPTYQLSLHTINCKIAIVV*NICFDMPVAEEFQ 142
P ++ E ++PT + ++HT+ + CF+ P+A E +
Sbjct: 2477 PTQESEQSLEPTSEKNVHTVTETTTVT--RECFEEPIASELE 2516
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 17 PAKQVEHLIKPTYQLSLHTINCKIAIVV*NICFDMPVAEEFQ 142
P ++ E ++PT + ++HT+ + CF+ P+A E +
Sbjct: 2477 PTQESEQSLEPTSEKNVHTVTETTTVT--RECFEEPIASELE 2516
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,180,078
Number of Sequences: 27780
Number of extensions: 288364
Number of successful extensions: 960
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -