Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7c04
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 33 0.033
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 30 0.30
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 29 0.92
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 28 1.2
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 28 1.6
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 28 1.6
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ... 27 2.1
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 6.5
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 25 8.6
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 33.5 bits (73), Expect = 0.033
Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
Frame = +2
Query: 275 EEENYKMYMDSLQK--HQLESEYHTQISMEQLHQAMQSSLNNSGIVHNFQLPLSPRQMST 448
E+ +Y+ + L++ ++LES + E+ + SSL QL + S
Sbjct: 661 EQTSYQRSLIRLEQLTNELESLKSISRNKEKKFEEAISSLQLEKSNIQLQLTSLTSERSL 720
Query: 449 LMLKTNHLSRSLNFNETIHPQRDEID-LHQNLRHEEALRNLDVTLFRNELELQNN-LSQA 622
+ K N L +SL +E +DE+D +++L+ + A + ++V ++L + N+ L Q+
Sbjct: 721 ALEKLNDLEKSLVLSER---SKDELDESYKSLQEQLASKKIEVQNVSSQLSICNSQLEQS 777
Query: 623 --LVQNLSEQDLRNLDLSRINEVQLQNLRTDIPLHHESN 733
+V NL ++L + + L NL + + + N
Sbjct: 778 NHIVDNLKSENLLLTSVKDKLKADLSNLESKLSSLQQDN 816
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 30.3 bits (65), Expect = 0.30
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 206 QLSSLNAEWFLKMDFVKREEHNAEEENYKMYMDSLQKHQLESEYHTQISMEQL--HQAMQ 379
QL S N W L D V+ EE+N+ ++++ L+ + Y +S+ + H +
Sbjct: 315 QLLSKNRNWVLMRDIVQLEEYNSYLLDHRIVSAFLKPLSEKGNYKDILSLISVWQHSVWR 374
Query: 380 SSLNNSGIVHNFQL 421
SL +V++F +
Sbjct: 375 PSLAYLQVVYSFSM 388
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 28.7 bits (61), Expect = 0.92
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = +2
Query: 242 MDFVKREEHNAEEENYKMYMDSLQKHQLESEYHTQI---SMEQLHQAMQSSLNNSGIVHN 412
+ F ++ N +EN+ ++ ++ +S I + E+ + S+L G++ +
Sbjct: 435 LKFYAKKVANVSDENFPIFATAITGRPYKSLKSLPIGGPNHEEEQKKFISALQKGGMLQS 494
Query: 413 FQLPLSPRQMSTLML-KTNHLSRSLNFN 493
LS TL+L KTN L RSL+ N
Sbjct: 495 IIRLLSTMPRLTLLLMKTNDLVRSLDEN 522
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 28.3 bits (60), Expect = 1.2
Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 7/185 (3%)
Frame = +2
Query: 203 RQLSSLNAEWFLKMDFVKREEHNAEEENYKMYMDSLQKHQLESEYHTQISMEQLHQAMQS 382
++LSS E+ + D VK E + Y+ +DSL K +E E L +
Sbjct: 47 KELSSKTKEFRKQPDEVKLGEMKGLLKLYQSGIDSLTKRAKSAEATFFRVYETLGEVPDP 106
Query: 383 SLNNSGIVHNFQLPLSPRQMSTLMLKTNHLSRSLNFNETIHPQ----RDEIDLHQNLRHE 550
+N + + +Q+ L + + SL E + + R E+D +++L
Sbjct: 107 YPLLIEAANNLK---TQKQIEDLKKEKEEMEGSLQGKEKLEREVENLRKELDKYKDLVET 163
Query: 551 EALRNLDVTLFRNELELQNNLSQALVQNLSEQDLRNLD--LSRINEVQLQNLRTDIPL-H 721
EA + +T + E E Q L +++ +++ + S+I E+Q L D+
Sbjct: 164 EAEKRAAIT--KEECEKSWLEQQKLYKDMEQENASTIQKLTSKIRELQASQLDHDLQASQ 221
Query: 722 HESNG 736
+ES G
Sbjct: 222 NESAG 226
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -3
Query: 108 FRVESIKYYIVSINMFEKIKIKQVFFNHL 22
F +ES++++ + IN EKI +K +F+N L
Sbjct: 43 FFIESLQFHYL-INQSEKISLKLIFWNEL 70
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 260 EEHNAEEENYKMYMDSLQKHQLESEYHTQISMEQLHQAMQSSLNNS 397
EE ++E K Y+ K ++E H Q+ +EQ + + +L S
Sbjct: 25 EEIVFDKEKRKEYLTGFHKRKVERRKHAQVQLEQQKREERLALRKS 70
>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 200
Score = 27.5 bits (58), Expect = 2.1
Identities = 37/178 (20%), Positives = 75/178 (42%), Gaps = 12/178 (6%)
Frame = +2
Query: 236 LKMDFVKREEHNAEEENYKMYMDSLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIVHNF 415
L++ +K+ +A+++N + L L + S EQL QA + + + N
Sbjct: 21 LRIHELKQHSRDADDQNPEQIKRQLMSKLLILREANRKSYEQLVQAKTITAEHKSELDNA 80
Query: 416 QLPLSPRQMSTLMLKTNHLSRSLNFNETIHPQRDEIDLHQNLRHEEALR-----NLDVTL 580
++ L Q L LKT + ++ E I+ + + L+ + +L + +
Sbjct: 81 RIRLQALQYKKLHLKT--IIKNYEEKEHIYTALPLVSKEEFLKEHPEFKSSNDHDLMLAI 138
Query: 581 FRNELELQNNLS---QALVQN----LSEQDLRNLDLSRINEVQLQNLRTDIPLHHESN 733
+EL+ + LS Q L++ +SE + L + +E LR+ +P+ N
Sbjct: 139 LEDELKERQRLSTLKQELLKRKAALISENKAKRNALQKGDEKLQTFLRSSVPVQEYYN 196
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 27.1 bits (57), Expect = 2.8
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = -2
Query: 328 FQLMFLKTVHVHFVILFFGIMFFSFHKIH 242
F F VH+H+++ G+ F+ H
Sbjct: 403 FMFAFCSKVHIHYIVSLIGLTIFNIADYH 431
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 6.5
Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 3/169 (1%)
Frame = +2
Query: 209 LSSLNAEWFLKMDFVKREEHNAEEENYKMYMDSLQKHQLESEYH-TQISMEQLHQAMQSS 385
L L++E M+ +K + A+E K+ +D +L+ E ++ + E S
Sbjct: 1486 LQKLHSESLSLMENIKSQLQEAKE---KIQVDESTIQELDHEITASKNNYEGKLNDKDSI 1542
Query: 386 LNN-SGIVHNFQLPLSPRQMSTLMLKTNHLSRSLNFNETIHPQRDEIDLHQNLRHEEALR 562
+ + S + L+ + + L T S L FN + +++ H++ E R
Sbjct: 1543 IRDLSENIEQLNNLLAEEKSAVKRLSTEKESEILQFNSRLA----DLEYHKSQVESELGR 1598
Query: 563 N-LDVTLFRNELELQNNLSQALVQNLSEQDLRNLDLSRINEVQLQNLRT 706
+ L + EL+L N +L + + + DLS I + ++LRT
Sbjct: 1599 SKLKLASTTEELQLAENERLSLTTRMLDLQNQVKDLSNIKDSLSEDLRT 1647
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 25.4 bits (53), Expect = 8.6
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +2
Query: 422 PLSPRQMSTLMLKTNHLSRSLNFNE-TIHPQRDEIDLH-QNLR-HEEALRNLDVTLFRNE 592
P SP+ S LM + + LSR + +E ++ P + + + LR + LR+L++ +NE
Sbjct: 295 PASPKSDSALMDEDSDLSRRHSLSEQSLSPVSESYPQYAKTLRLTSDQLRSLNLKPGKNE 354
Query: 593 LELQNNLSQAL 625
L N +A+
Sbjct: 355 LSFGVNGGKAI 365
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,254
Number of Sequences: 5004
Number of extensions: 59469
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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