Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7c04
(743 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68227-15|CAJ80810.1| 414|Caenorhabditis elegans Hypothetical p... 30 1.5
Z68227-14|CAJ80809.1| 448|Caenorhabditis elegans Hypothetical p... 30 1.5
Z68227-13|CAA92511.1| 444|Caenorhabditis elegans Hypothetical p... 30 1.5
L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated p... 29 2.6
AF039715-2|AAB96731.1| 158|Caenorhabditis elegans Hypothetical ... 29 2.6
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 3.5
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 29 3.5
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 3.5
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr... 29 4.6
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 29 4.6
AF000266-7|AAC71173.1| 212|Caenorhabditis elegans Hypothetical ... 29 4.6
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 28 6.1
AC024817-5|ABQ13054.1| 274|Caenorhabditis elegans Hypothetical ... 28 8.0
>Z68227-15|CAJ80810.1| 414|Caenorhabditis elegans Hypothetical
protein F49C12.7c protein.
Length = 414
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 260 EEHNAEEENY-KMYMDSLQKHQLESEYHTQISMEQL 364
EE +A +E Y K Y D L KH E ++ +EQL
Sbjct: 316 EERHANKEKYLKHYFDCLTKHCKEDDHPVPFDLEQL 351
>Z68227-14|CAJ80809.1| 448|Caenorhabditis elegans Hypothetical
protein F49C12.7b protein.
Length = 448
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 260 EEHNAEEENY-KMYMDSLQKHQLESEYHTQISMEQL 364
EE +A +E Y K Y D L KH E ++ +EQL
Sbjct: 346 EERHANKEKYLKHYFDCLTKHCKEDDHPVPFDLEQL 381
>Z68227-13|CAA92511.1| 444|Caenorhabditis elegans Hypothetical
protein F49C12.7a protein.
Length = 444
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 260 EEHNAEEENY-KMYMDSLQKHQLESEYHTQISMEQL 364
EE +A +E Y K Y D L KH E ++ +EQL
Sbjct: 346 EERHANKEKYLKHYFDCLTKHCKEDDHPVPFDLEQL 381
>L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated
protein 36 protein.
Length = 1249
Score = 29.5 bits (63), Expect = 2.6
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Frame = +2
Query: 182 VVTEKN*RQLSSLNAEWFLKMDFVKREEHN-----AEEENYKMYMDSLQKHQLESEYHTQ 346
V++E S ++ E LK ++ K E AE + K ++ K + + Y +
Sbjct: 31 VLSEHMKETFSKISHETILKQNYEKLVEEEQFDPRAELKKSKHRIEDYLKVRSQFAYKAK 90
Query: 347 ISMEQLHQAMQSSLNNSGIVHNFQLPLSPRQMS--TLMLKTNHLSRSLNFNET 499
IS+E S++N+ +F +S +Q + T + ++NHL + L NET
Sbjct: 91 ISLEARSVRNDSTVNDPQS-KSFIRFMSAKQGNDGTTIYESNHLGKRLKVNET 142
>AF039715-2|AAB96731.1| 158|Caenorhabditis elegans Hypothetical
protein R06A10.3 protein.
Length = 158
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 299 MDSLQKH--QLESEYHTQISMEQLHQAMQSSLNNSGIVHNFQLPLSPR 436
M L +H QL++ YH E+ HQA++ + + H FQ SPR
Sbjct: 1 MKKLARHREQLKARYHIGSGQERGHQAVEKTAYRQRVQH-FQKSRSPR 47
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +2
Query: 419 LPLSPRQMSTLMLKTNHLSRSLNFNETIHPQ-RDEIDLHQNLRHEEALRNLDVTLFRNEL 595
L LS ++ + T+ L R L E++ + R ID+ HE L + +NEL
Sbjct: 1848 LRLSDSKVQDMKDDTDKLRRDLTKAESVENELRKTIDIQSKTSHEYQLLKDQLLNTQNEL 1907
Query: 596 ELQNNLSQALVQNL 637
NN Q L L
Sbjct: 1908 NGANNRKQQLENEL 1921
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +2
Query: 419 LPLSPRQMSTLMLKTNHLSRSLNFNETIHPQ-RDEIDLHQNLRHEEALRNLDVTLFRNEL 595
L LS ++ + T+ L R L E++ + R ID+ HE L + +NEL
Sbjct: 1921 LRLSDSKVQDMKDDTDKLRRDLTKAESVENELRKTIDIQSKTSHEYQLLKDQLLNTQNEL 1980
Query: 596 ELQNNLSQALVQNL 637
NN Q L L
Sbjct: 1981 NGANNRKQQLENEL 1994
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +2
Query: 419 LPLSPRQMSTLMLKTNHLSRSLNFNETIHPQ-RDEIDLHQNLRHEEALRNLDVTLFRNEL 595
L LS ++ + T+ L R L E++ + R ID+ HE L + +NEL
Sbjct: 1921 LRLSDSKVQDMKDDTDKLRRDLTKAESVENELRKTIDIQSKTSHEYQLLKDQLLNTQNEL 1980
Query: 596 ELQNNLSQALVQNL 637
NN Q L L
Sbjct: 1981 NGANNRKQQLENEL 1994
>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical protein
F39B1.1 protein.
Length = 1607
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 563 NLDVTLFRNELELQNNLSQALVQNLSEQ-DLRNLDLSRINEVQLQNLRTDIPLHHE 727
+LD T F +LQ + V +L +NL I+E + NL+TDI L HE
Sbjct: 918 SLDFT-FEIYWQLQQRVDHCAVDDLPYAIRCQNLQQKMIDEHENPNLKTDIKLQHE 972
>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical protein
F39B1.1 protein.
Length = 1607
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 563 NLDVTLFRNELELQNNLSQALVQNLSEQ-DLRNLDLSRINEVQLQNLRTDIPLHHE 727
+LD T F +LQ + V +L +NL I+E + NL+TDI L HE
Sbjct: 918 SLDFT-FEIYWQLQQRVDHCAVDDLPYAIRCQNLQQKMIDEHENPNLKTDIKLQHE 972
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 371 AMQSSLNNSGIVHNFQLPLSPRQMSTLMLKTNHLSRSLNFN 493
A + +N S H +Q+ SP +LK HL+R FN
Sbjct: 771 AFEQDMNASSSGHAYQMQNSPEVSIGKLLKQQHLNRPNQFN 811
>AF000266-7|AAC71173.1| 212|Caenorhabditis elegans Hypothetical
protein W08F4.9 protein.
Length = 212
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = +2
Query: 617 QALVQNLSEQDLRNLDLSRINEVQLQNLRTDIPLHH 724
+ LVQN E + NL L NEV L N RT LHH
Sbjct: 89 ELLVQNYEELKVTNLTL---NEVFLSNSRTLRSLHH 121
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 290 KMYMDSLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIVHNFQLPLSPRQ 439
+M+M L +H + ++H ++ M +H Q L +H L P+Q
Sbjct: 1172 QMHMQMLPQHHQQQQHHEEMMM--MHHQQQQQLQQQQQMHQMPLHHLPQQ 1219
>AC024817-5|ABQ13054.1| 274|Caenorhabditis elegans Hypothetical
protein Y54G2A.12 protein.
Length = 274
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +2
Query: 299 MDSLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIV--HNFQLPLSPRQMSTLMLKTNHL 472
MD+LQ + +SM+Q+ + S+L IV + + + RQ++ + KT +
Sbjct: 1 MDALQAYSDSEHSDNDVSMDQIAKGKSSALLERAIVTAPDVESKSAIRQVAIVDPKTKEI 60
Query: 473 SRSLNFNETIHPQRDEID 526
+ F++ P+ ++
Sbjct: 61 KSNPKFDQLFKPESGPVN 78
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,863,420
Number of Sequences: 27780
Number of extensions: 319322
Number of successful extensions: 954
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -