Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7c03
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    25   0.62 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   1.9  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   3.3  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   4.4  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 548 EVLALKIQKEHMDNAASSTNAHTRQNQREAMK 643
           E+ ALK +K + +N  SSTN   R  +R+  K
Sbjct: 79  ELPALKSRKLNNNNVVSSTNQEIRGPKRKTWK 110


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 254 RKTLVNLELWSFIQNKFPQEIDIKSRGDD 340
           R T   L+LWS  QNK     D  +R  D
Sbjct: 403 RTTDTFLDLWSDYQNKSLAAFDFVARNSD 431


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 506 EEAHKKYIENLKQDEVLALKIQK 574
           EE H+K  ENLK    L  K QK
Sbjct: 372 EEIHEKARENLKHHANLRQKNQK 394


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/56 (19%), Positives = 25/56 (44%)
 Frame = +2

Query: 500 EEEEAHKKYIENLKQDEVLALKIQKEHMDNAASSTNAHTRQNQREAMKFKLKTAKI 667
           E+++ +KK+ E   ++  L +    ++    +     HT  +  EA   K   ++I
Sbjct: 418 EDKDGYKKFYEQFSKNIKLGIHEDSQNRAKLSELLRYHTSASGDEACSLKDYVSRI 473


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,590
Number of Sequences: 336
Number of extensions: 2398
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)