Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7c03
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 44 2e-05
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 40 4e-04
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 39 8e-04
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 36 0.004
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 34 0.023
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 33 0.041
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 33 0.054
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 32 0.095
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 32 0.095
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 32 0.095
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 31 0.22
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 30 0.29
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 30 0.38
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 29 0.51
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 29 0.51
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 29 0.51
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 29 0.67
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 29 0.88
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S... 27 3.6
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 27 3.6
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 4.7
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 25 8.2
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 44.4 bits (100), Expect = 2e-05
Identities = 25/76 (32%), Positives = 38/76 (50%)
Frame = +2
Query: 98 CSICQSILVEPVTLPCFHDFCHRCFNGSVENNALCCPLCRLRIGSWLRTATKRKTLVNLE 277
C+IC ++ +PV L C H FC C + CPLCR + + A R ++
Sbjct: 360 CAICSNVAYKPVRLGCSHVFCLHCLIILQKQKVDFCPLCRAK---EVMKADSRN--IDHA 414
Query: 278 LWSFIQNKFPQEIDIK 325
L +F++ FP+EI K
Sbjct: 415 LMNFMKTYFPREIKEK 430
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 98 CSICQSILVEPVTLPCFHDFCHRCFNGSVENNALCCPLCRLRIGS 232
C IC +L +PV PC H FC C ++ + CP CR + S
Sbjct: 169 CQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQ-CPTCRFGLPS 212
Score = 30.7 bits (66), Expect = 0.22
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 95 ICSICQSILVEPVTLPCFHDFCHRCFNGSVENNA 196
IC C + PVTLPC C +CF + + +
Sbjct: 18 ICPGCNCLPDWPVTLPCGGTVCRKCFRNAYSSES 51
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 38.7 bits (86), Expect = 8e-04
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 98 CSICQSILVEPVTLPCFHDFCHRCFNGSVENNALCCPLCR 217
CS+C + P C H FC C NG + CPLCR
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCINGWTSKKSE-CPLCR 294
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 98 CSICQSILVEPVTLPCFHDFCHRCFNGSVENNALCCPLCRLRI 226
C IC L P T C H +C+ C ++ + CP CR ++
Sbjct: 85 CPICTEALQRPFTTHCGHTYCYECLLNWLKESK-SCPTCRQKL 126
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 33.9 bits (74), Expect = 0.023
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 95 ICSICQSILVEPVTLPCFHDFCHRCFNGSVENNALCCPLCRLRI 226
IC IC+ I+ + C H +C C +++++ CP+C+ ++
Sbjct: 1091 ICIICRDIIKQGFITTCGHLYCSFCLEAWLKHSS-SCPMCKTKL 1133
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 33.1 bits (72), Expect = 0.041
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +2
Query: 98 CSICQSILVEPVTLPCFHDFCHRCFNGSVENNALCCPLCR 217
C IC P+ C H FC C + + + CP CR
Sbjct: 29 CLICHEYFRAPLITSCSHTFCSFCIRDYLREHPM-CPACR 67
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 32.7 bits (71), Expect = 0.054
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 98 CSICQ-SILVEPVTLPCFHDFCHRCFNGSVENNALCCPLCRLRIGS 232
CS+C + + C H FC++C +E CP+C G+
Sbjct: 627 CSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRRCPICGRGFGA 672
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 31.9 bits (69), Expect = 0.095
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Frame = +2
Query: 95 ICSICQSILVEPVTLPCFHDFCHRC----FNGSVENNALCCPLC 214
+C IC + + + C H FC C N + + + CP C
Sbjct: 710 VCKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSC 753
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 31.9 bits (69), Expect = 0.095
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 119 LVEPVTLPCFHDFCHRCFNGSVE-NNALCCPLCRLRI 226
+ P T C H +C+ C ++ N + CP+C+ RI
Sbjct: 205 ITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICKHRI 241
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 31.9 bits (69), Expect = 0.095
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 137 LPCFHDFCHRCFNGSVENNALCCPLCRLRIGSWLRTATK 253
LPC H F C + + N+ CPLC+ + + L A++
Sbjct: 515 LPCHHIFHPACIDPYLLKNSDLCPLCKQSVTNMLENASE 553
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 30.7 bits (66), Expect = 0.22
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +2
Query: 98 CSICQSILVEPVTLP-CFHDFCHRCFNGSVENNALCCPLC 214
CS+C + +P C H FC C E+ CP C
Sbjct: 639 CSVCNFSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTCPQC 678
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 30.3 bits (65), Expect = 0.29
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Frame = +2
Query: 98 CSICQSILVEPVTLP------CFHDFCHRC-FNGSVENNALCCPLCR 217
C+IC S+L TLP C H F C + +N+ CPLCR
Sbjct: 1558 CAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCPLCR 1604
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 29.9 bits (64), Expect = 0.38
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +2
Query: 98 CSICQSILVEPVTLPCFHDFCHRCFNGSVENNALC--CPLCRLRI 226
C IC PC H FC+ C ++ A CP+CR ++
Sbjct: 206 CVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKV 250
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 29.5 bits (63), Expect = 0.51
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = +2
Query: 95 ICSICQSILVEPVTLPCFHDFCHRCFNGSVENNALCCPLCRLRI 226
IC IC + P L FC+ C ++ + CP+ L +
Sbjct: 256 ICKICGEKIKNPAVLSTGFVFCYPCIQVWLQRHPFKCPVTNLEL 299
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 29.5 bits (63), Expect = 0.51
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 95 ICSICQSILVEPVTLPCFHDFCHRC 169
+C IC+ P+ C H FC +C
Sbjct: 253 VCLICKKDYRSPIATTCGHHFCEQC 277
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 29.5 bits (63), Expect = 0.51
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 95 ICSICQSILVEPVTLPCFHDFCHRC 169
IC IC + LPC H CH C
Sbjct: 80 ICFICAEGITYSCVLPCNHRMCHVC 104
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 29.1 bits (62), Expect = 0.67
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 137 LPCFHDFCHRCFNGSVENNALCCPLCRLRI 226
+PC H F C +EN+ CPLCR +
Sbjct: 125 MPCGHIFGKNCLQKWLENHC-TCPLCRKEV 153
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 28.7 bits (61), Expect = 0.88
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 500 EEEEAHKKYIENLKQDEVLALKIQKEHMDNAASSTNAHTRQN--QREAMKFKLKTAKID 670
++++ +E +KQ E+ ALK QK+ ++ + H + Q+E +LK +D
Sbjct: 1898 QKDDLLSSLVERIKQIEMFALKTQKDSNNHREENLQLHRQLGVLQKEKKDLELKLFDLD 1956
>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
L38|Schizosaccharomyces pombe|chr 1|||Manual
Length = 74
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 554 LALKIQKEHMDNAASSTNAHTRQNQREAMKFKLKTAK 664
+ L +Q H +A T+A ++NQ +A+KFKL+ ++
Sbjct: 8 IKLFLQLAHRGDA---TSARVKKNQNKAVKFKLRCSR 41
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +2
Query: 131 VTLPCFHDFCHRCFNGSVENNALCCPLCRLRI 226
V LPC H+F C + + CP C +
Sbjct: 335 VALPCKHEFHRPCIAKWIVDYRHACPTCNTEV 366
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +2
Query: 98 CSICQSILV---EPVTLPCFHDFCHRCFNGSVENNALCCPLCR 217
C+IC + + + LPC H F C + N C +CR
Sbjct: 396 CTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCA-ICR 437
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 137 LPCFHDFCHRCFNGSVENNALCCPLC 214
LPC H F +C + + CPLC
Sbjct: 221 LPCEHVFHTQCIDTWMTTMKASCPLC 246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,366
Number of Sequences: 5004
Number of extensions: 40308
Number of successful extensions: 138
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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