Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7b17
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33588| Best HMM Match : VRP3 (HMM E-Value=6.4)                      30   2.2  
SB_18501| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_33588| Best HMM Match : VRP3 (HMM E-Value=6.4)
          Length = 372

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = -2

Query: 277 QILELRNGTSY*SRFSSKYFQRCSNFSVKSFQGLMMTRTTDTGTYIF*YFMYFEFRHFDF 98
           Q L + N   Y    +S Y Q CS+  + S   L    + D    +F  F++ + R+ D 
Sbjct: 157 QFLAILNAALYVGSAASLY-QICSSLGLISGNALDCFVSRDQFE-VFLAFLFRQIRYLDM 214

Query: 97  IYFDLMYIDFIYFD 56
            Y  + Y+D  Y D
Sbjct: 215 RYLVIRYLDIRYLD 228


>SB_18501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 464 LKYWCSPLILLFTLEYVFVIQYNTQV*YIFRKGLKCSIWY----DYSC 595
           L Y C PL  + TL+YV  + Y   + Y F     C++ Y    DY+C
Sbjct: 75  LDYAC-PLDYVCTLDYVCTLDYACTLDYAFTLDYACTLDYAFTLDYAC 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,019,647
Number of Sequences: 59808
Number of extensions: 433223
Number of successful extensions: 1254
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)