Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7b14
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    25   5.0  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   5.0  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    25   6.7  

>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 198 YLLIIVMK*SCLFKKIYSLYYNITSC*NQLQLYFLLYTFKTQILFKFSFS 49
           + L+  +K + L +   ++   ITS     ++YFL +   +QILF +  S
Sbjct: 244 FFLLRSLKYAVLPESTMAINATITSHQRSRRIYFLFFIAASQILFMYVLS 293


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
 Frame = -3

Query: 143 CIITLLVVEINYNYIFCFIH-LRRKYYLNFRFRILPIFLHTIN 18
           C  T   +    N+ FCF+H +     L F    L IF    N
Sbjct: 783 CSFTDFEINSILNFFFCFLHTVEPSGKLTFELAFLEIFYELFN 825


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 114 QLQLYFLLYTFKTQILFKFS-FSYIANI 34
           QL+L FLL  + TQ+ FK +  +Y+ NI
Sbjct: 430 QLRLAFLLQQWNTQLDFKETLLAYVLNI 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,911
Number of Sequences: 5004
Number of extensions: 29838
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)