Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7b14
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1078 + 8489872-8490168,8490280-8490462,8490667-8490908,849...    28   3.8  

>01_01_1078 +
           8489872-8490168,8490280-8490462,8490667-8490908,
           8490988-8491240
          Length = 324

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 282 VIKTNLCLQNLDLVSAIHXLSMTRMDRHHKADLLEWALNLC 404
           V+   LCL   DLV+A   LS+    RH +  +L+    LC
Sbjct: 110 VVAWQLCLLRADLVTAHVSLSVEYQPRHPRMSVLQAVRVLC 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,175,518
Number of Sequences: 37544
Number of extensions: 166148
Number of successful extensions: 305
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)