Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7b14
         (436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)               29   1.7  
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_15335| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   27   5.0  
SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)                    27   5.0  
SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)         27   6.7  

>SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)
          Length = 592

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 316 SRFXRHRFVFITITDTXGFFHMIFITRCVR-HCLRWVLLFLFT 191
           SR   HRF  +++ D+  +   I +  C+R  CLR+ +L +FT
Sbjct: 482 SRVYVHRFSCLSVNDSRVYVFTILVITCLRFSCLRFTIL-VFT 523


>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2179

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 330 IHXLSMTRMDRHHKADLLEWALNLCFAWQNKLH 428
           ++ +  TR+DR H+   +EW +  C     K H
Sbjct: 219 VYRVGSTRLDREHRKRYIEWEVPACIKSTGKDH 251


>SB_15335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 140 IITLLVVEINYNYIFCFIHLRRKYYLNFRFRILPIFLHTINTDY 9
           I++ L+  I  NY  C     ++Y L  RFR++ +  +   T Y
Sbjct: 14  ILSHLIASIT-NYFCCLYRNAKRYALKLRFRVILVLFYMCYTVY 56


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -3

Query: 140 IITLLVVEINYNYIFCFIHLRRKYYLNFR----FRILPIFLHTI 21
           +I LL++ IN+  +F  +  R   YLN      F I  IFL  I
Sbjct: 507 LIVLLLIVINFTLVFLIVRFREPDYLNLGLSCVFAITIIFLGLI 550


>SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)
          Length = 278

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 251 HVKKSTSIRDRDKNKSVPXESGS 319
           H+ KSTS +D +K  SVP   GS
Sbjct: 79  HIDKSTSYKDLNKPVSVPYTQGS 101


>SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)
          Length = 1172

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 429 HATCSAMQNTDSRPTPANRPCDXGPSLSLR 340
           H TC    +     TP   PCD GP   +R
Sbjct: 436 HTTCFRNSSGVMEMTPGPSPCDKGPYFGVR 465


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,650,808
Number of Sequences: 59808
Number of extensions: 215824
Number of successful extensions: 467
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)