Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7b14
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81485-4|CAB03978.1|  343|Caenorhabditis elegans Hypothetical pr...    28   2.5  
U64846-1|AAG24113.2|  352|Caenorhabditis elegans Serpentine rece...    28   2.5  
AC199239-1|ABO33277.1|  147|Caenorhabditis elegans Hypothetical ...    27   5.9  

>Z81485-4|CAB03978.1|  343|Caenorhabditis elegans Hypothetical
           protein C49F5.4 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 22/91 (24%), Positives = 36/91 (39%)
 Frame = +3

Query: 132 CYNTSCIFF*TSMIISSQL*VNKNNKTQRKQCLTHLVIKIM*KNPXVSVIVIKTNLCLQN 311
           C    C++    M + S L V + NK QR       V     K          T +   N
Sbjct: 64  CRFQKCLY--VGMTLPSYLLVLEQNKEQRLAITIDCVRNTHNKRMDSLFNFFVTEMN-PN 120

Query: 312 LDLVSAIHXLSMTRMDRHHKADLLEWALNLC 404
           +D +  ++ ++ T+ D H + D   WA + C
Sbjct: 121 VDDIVELNKITYTKRDEHIRMDFQTWAFHSC 151


>U64846-1|AAG24113.2|  352|Caenorhabditis elegans Serpentine
           receptor, class t protein3 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -3

Query: 146 ACIITLL--VVEINYNYIFCFIHLRRKYY 66
           AC++  +   VE+N N++F FI  RR +Y
Sbjct: 123 ACVLLAIERCVEVNSNFLFAFIFGRRVFY 151


>AC199239-1|ABO33277.1|  147|Caenorhabditis elegans Hypothetical
           protein 6R55.2 protein.
          Length = 147

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 134 TLLVVEINYNYIFCFIHLRRKYYLNFRFR-ILPIFLHTIN 18
           +L +  + ++ +  F+H R+K Y+ F  R I+ I  H IN
Sbjct: 106 SLSIFFLTFSSVSSFVHFRKKMYVIFIVRQIILISFHLIN 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,507,843
Number of Sequences: 27780
Number of extensions: 174264
Number of successful extensions: 413
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)