Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7b14
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   3.4  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   7.9  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   7.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   7.9  

>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 176 NDHACLKKYTACIITLLVVEINYNYIFCFI 87
           +DH  L+ YT CI+ LL    N N+ F  I
Sbjct: 61  DDHD-LQCYTTCIMKLLRTFKNGNFDFDMI 89


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 75  QILFKFSFSYIANISTHN 22
           +I+   S +YI+NIS +N
Sbjct: 80  KIISSLSNNYISNISNYN 97


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 75  QILFKFSFSYIANISTHN 22
           +I+   S +YI+NIS +N
Sbjct: 80  KIISSLSNNYISNISNYN 97


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 75  QILFKFSFSYIANISTHN 22
           +I+   S +YI+NIS +N
Sbjct: 318 KIISSLSNNYISNISNYN 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,967
Number of Sequences: 438
Number of extensions: 2178
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)