Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7b13
         (453 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.59 
SB_19913| Best HMM Match : zf-C2H2 (HMM E-Value=8.9e-08)               29   1.8  
SB_50400| Best HMM Match : Tropomodulin (HMM E-Value=0.17)             29   2.4  
SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_15606| Best HMM Match : LRRCT (HMM E-Value=7)                       28   3.1  
SB_29912| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00036)         28   3.1  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.2  
SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)               27   7.3  

>SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 30.7 bits (66), Expect = 0.59
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +3

Query: 42  IIKSLA*NLSGPLSVCASMPVTDLVLLASKVLRTDKMCHTCSSACVRVTTNPNGAVYLLY 221
           +  + A N S   S+  +  +   +   S++L T ++  T S     V+++PN +V LLY
Sbjct: 250 VTSTTAVNSSKSASIKLNSTLIPTISKTSEILHTSQIYETISINVTAVSSSPNASVSLLY 309

Query: 222 VNKS 233
             K+
Sbjct: 310 ETKA 313


>SB_19913| Best HMM Match : zf-C2H2 (HMM E-Value=8.9e-08)
          Length = 532

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
 Frame = -2

Query: 209 HCAVGICGNAHTSRAASVAH-----FVCAQNL*SQKHKVRYGHASAHGQRTRQILRQGF 48
           HC    C  +   RA +V H     F C  N   Q H   YG  + H +  R+ +  GF
Sbjct: 447 HCGDSFCQPSEL-RAHAVVHQGRKPFKCGGNNAEQSHSYPYGRETIHVREVRENIYTGF 504


>SB_50400| Best HMM Match : Tropomodulin (HMM E-Value=0.17)
          Length = 641

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 6   LLIKCTDTLPDIIIKSLA*NLSGPLSVCASMPVTDLV-LLASKVLRT 143
           LL+ CTD +PD   K+LA +    L +   +   D+V  L S + RT
Sbjct: 252 LLLNCTDRIPDQFTKALASSPIQKLGIFGPLGAGDIVKALVSMLSRT 298


>SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1264

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 6   LLIKCTDTLPDIIIKSLA*NLSGPLSVCASMPVTDLV-LLASKVLRT 143
           LL+ CTD +PD   K+LA +    L +   +   D+V  L S + RT
Sbjct: 768 LLLNCTDRIPDQFTKALASSPIQKLGIFGPLGAGDIVKALVSMLSRT 814


>SB_15606| Best HMM Match : LRRCT (HMM E-Value=7)
          Length = 245

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = +3

Query: 180 RVTTNPNGAVY--LLYVNK-SR*RRGARMQLITYAPRVPFKDGVIDLRLIFIGRLFSYPL 350
           R +  P GA Y  + Y N+ +    GA  Q I+YA R    D +I  ++ F+G   SY  
Sbjct: 141 RPSHTPTGAYYQTISYANRPTHTPTGAYYQTISYANRCVLPDHLIRQQVRFVGP--SYTP 198

Query: 351 TKRVFALTLYVGGC 392
           T   +    Y   C
Sbjct: 199 TGAYYQTISYANRC 212


>SB_29912| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00036)
          Length = 618

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +2

Query: 266 HVRSSCPVQGRCYR 307
           H+ SSCPV+GRC++
Sbjct: 88  HLISSCPVRGRCFK 101


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 361 TRLVSGYENSRPININLRSITPSLNGTRGAYVISCIR 251
           TRLV+   +S  +N++  S TPS+  T  A V S I+
Sbjct: 576 TRLVTSTISSSTVNVSAISTTPSIESTIMASVASSIQ 612


>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 244 RLYRDLFTYNKYTAPLGFVVTRTQAELQVWHILSVRKTFE 125
           +++ +  TY +YT PLG++ T    +   W   S+ KT+E
Sbjct: 358 QIFYEPLTYGQYTDPLGYIYTIADKQYLRWANDSM-KTYE 396


>SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)
          Length = 410

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 266 HVRSSCPVQGRCYR 307
           H  S+CPV+GRC+R
Sbjct: 160 HPISTCPVRGRCFR 173


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,782,604
Number of Sequences: 59808
Number of extensions: 300478
Number of successful extensions: 830
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)