Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7b09
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    29   0.38 
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    28   0.88 
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.5  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    27   2.0  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   2.7  
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   6.2  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    25   6.2  
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    25   6.2  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   6.2  
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    25   8.2  

>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 29.1 bits (62), Expect = 0.38
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 330 LEKAQYPEYFKKREQRKKEFVAMWEKEYGK 419
           LE+   P+   +R QR ++  A+WEK+YGK
Sbjct: 286 LEEVDIPKRKNRRGQRARQ--AIWEKKYGK 313


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 0.88
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 291 LHAHELHLQDLWQNI*VWDVASETIPLHPLSVTHL 187
           L A +L +Q+ W  I    +A++T+P +P+   H+
Sbjct: 118 LRASKLQIQNFWNYICFELLANDTVPANPIKEKHV 152


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 243 VWDVASETIPLHPLSVTHLL*SYWS-PWHAC 154
           +WD+A   + +  +S T  +  +WS  WH C
Sbjct: 222 IWDIAEYPLMMGNVSKTTSVNDFWSRDWHVC 252


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 383 FLSLLAFLEIFRILGFLKRMPI 318
           FLS+ AF+ IF + G+   +PI
Sbjct: 313 FLSMAAFISIFNVAGYQTSVPI 334


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 386 LFLSLLAFLEIFRILGFLKRMPI 318
           +FLS++AF+  F I G+   +PI
Sbjct: 312 VFLSMVAFISYFNIAGYQASVPI 334


>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 332

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 279 HERVVTPPDWVLDYWHPLEKAQYPE 353
           HE +    DW   Y HP +KA YPE
Sbjct: 138 HEFMNAKGDW--RYVHPGDKASYPE 160


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 333 EKAQYPEYFKKREQRKKEFVAMWEKEY 413
           +K  +  Y +KRE RKK   A++ + Y
Sbjct: 489 KKRLFVNYAEKREDRKKRLSAIFSQSY 515


>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 321 WHPLEKAQYPEYFKKREQRKKEFVAMWEKEYGK 419
           W P+ +    E  KK E  ++  V  W +E  K
Sbjct: 290 WQPVLETVSLEDAKKNENNRENLVKQWRREASK 322


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 246 KYFATSPGGVAHERVVTPPDWVLDYWHP 329
           KY+  S   V HE    PP  VL  W+P
Sbjct: 79  KYYVPSLKNVVHEGQTIPPPTVLP-WYP 105


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 354 YFKKREQRKKEFVAMWEKE 410
           Y +++EQRKKE++   +KE
Sbjct: 448 YDRQKEQRKKEYIKKVKKE 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,973,421
Number of Sequences: 5004
Number of extensions: 38376
Number of successful extensions: 98
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)