Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7b09
(492 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41534-5|AAB47597.1| 163|Caenorhabditis elegans Hypothetical pr... 87 9e-18
U41991-9|AAA83349.1| 297|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical pr... 28 4.2
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ... 28 4.2
Z50016-14|CAI06050.2| 177|Caenorhabditis elegans Hypothetical p... 27 5.6
Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical p... 27 9.8
Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical p... 27 9.8
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne... 27 9.8
>U41534-5|AAB47597.1| 163|Caenorhabditis elegans Hypothetical
protein C16A3.5 protein.
Length = 163
Score = 86.6 bits (205), Expect = 9e-18
Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
Frame = +3
Query: 39 THAQKVCSLYKRALRNLEAYYDRRHV-YRYQAVLLRERFDKHAKETNMIKANXXXXXXXX 215
+H QKV LYKR LR ++ +Y ++ R+Q ++R RFD +A E + K+
Sbjct: 13 SHRQKVTRLYKRCLREVDNWYGGNNLEVRFQKCIIRARFDANADEVDTRKSQILLADGCR 72
Query: 216 XXXXXQHPIPKYFATSPGGVAHERVVTPPDWVLD--YWHPLEKAQYPEYFKKREQRKKEF 389
+H P FA PGG +++R PD ++D W E+ Q+P YF REQRKKE
Sbjct: 73 QLWEKRHFKPFRFALDPGGSSYDRERESPDEIVDSDQWTLAEREQFPYYFNTREQRKKEL 132
Query: 390 VAMWEK 407
+ W K
Sbjct: 133 LTHWAK 138
>U41991-9|AAA83349.1| 297|Caenorhabditis elegans Hypothetical
protein C42D4.11 protein.
Length = 297
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 30 GVKTHAQKVCSLYKRALRNLEAYYDRRHVYRYQAVLLRERFDKHAKETNMI 182
G A K C+ Y AL LE + H+++ A L ER+ K T I
Sbjct: 151 GTHVEASKACNEYNAALTGLETENETYHIWK-TAYSLVERYPSQPKITERI 200
>Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 327 PLEKAQYPEYFKKREQRKKEFVAMWEKEYGKPDEKDKHH*TNCINS 464
P+ KA P Y ++ Q F AMW +++ H NC NS
Sbjct: 723 PVRKAPPPPYAQRIRQ---SFTAMWGEDHSHVAVAQPAHPRNCYNS 765
>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical protein
F26A3.3 protein.
Length = 1632
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 332 KRMPIVQDPIRGSDYTLMSYTSRTCGKIFR 243
+R V D G+D+T M + R CGK+FR
Sbjct: 1091 ERAERVPDYHMGNDHTPMYVSPRLCGKLFR 1120
>Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 327 PLEKAQYPEYFKKREQRKKEFVAMWEKEYGKPDEKDKHH*TNCINS 464
P+ KA P Y ++ Q F AMW +++ H NC NS
Sbjct: 723 PVRKAPPPPYAQRIRQ---SFTAMWGEDHSHVAVAQPAHPRNCYNS 765
>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
polymerase relatedEGO-1 protein.
Length = 1632
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 332 KRMPIVQDPIRGSDYTLMSYTSRTCGKIFR 243
+R V D G+D+T M + R CGK+FR
Sbjct: 1091 ERAERVPDYHMGNDHTPMYVSPRLCGKLFR 1120
>Z50016-14|CAI06050.2| 177|Caenorhabditis elegans Hypothetical
protein T21C12.8 protein.
Length = 177
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 335 ESPIS*IFQETRAKKERVRCYVGEGVWQAR*ER*ASLDKL 454
++PIS +F TR C+ GVW+ R +R S+ KL
Sbjct: 16 KAPISAVFCPTRGSSTAPNCFAIIGVWRRRKKR--SVSKL 53
>Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 315 DYWHPLEKAQYPEYFKKREQRKKE 386
DYW L K PE ++ QRK E
Sbjct: 427 DYWETLNKIWVPEISRQLHQRKLE 450
>Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 315 DYWHPLEKAQYPEYFKKREQRKKE 386
DYW L K PE ++ QRK E
Sbjct: 427 DYWETLNKIWVPEISRQLHQRKLE 450
>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
neurexin-like protein 1 protein.
Length = 1655
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 117 THVGGRSTLLNYVKPFYKGYRLF 49
T+ G+S +LN+V F GYR F
Sbjct: 1282 TYENGKSDVLNFVGDFLDGYRHF 1304
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,883,009
Number of Sequences: 27780
Number of extensions: 215894
Number of successful extensions: 621
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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