Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7b07
(515 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 54 1e-08
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 45 6e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 41 1e-04
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 40 3e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 36 0.004
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 36 0.004
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 31 0.10
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 30 0.18
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 29 0.55
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 26 2.9
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 25 6.7
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.7
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi... 25 8.9
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 25 8.9
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 54.0 bits (124), Expect = 1e-08
Identities = 34/122 (27%), Positives = 56/122 (45%)
Frame = +1
Query: 148 YGGDEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTG 327
YGGDE+ A+V DPG R+G++ ED PK +P+ G + DG
Sbjct: 6 YGGDEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG------------EFSDG------ 47
Query: 328 SKAGSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHP 507
R ++ PGME+ +++G V+NWD+ + Y + +++ HP
Sbjct: 48 -------RRLFGEEYIYKSNPGMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHP 100
Query: 508 VL 513
+L
Sbjct: 101 IL 102
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 45.2 bits (102), Expect = 6e-06
Identities = 36/119 (30%), Positives = 54/119 (45%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKA 336
+EI ALV D G + G+A +D P+A P++VG P H + G + Q S
Sbjct: 3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVG-RPRHH------GIMVG-MGQKDSYV 54
Query: 337 GSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVL 513
G E + + L P ++ G V+NWD EK+ + + +R E HP L
Sbjct: 55 GDEAQSKRGILTLKYP---------IEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCL 104
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 40.7 bits (91), Expect = 1e-04
Identities = 29/95 (30%), Positives = 45/95 (47%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKA 336
+EI +LV DPG R GYA E++P +P+ GV S+ TG
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGV-------RSDV---------TGRN- 50
Query: 337 GSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWD 441
++ +D ++H P PGMEV +G + +W+
Sbjct: 51 ----KYVVDELQIHAPIPGMEVKNGKSNGIIQDWE 81
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 39.5 bits (88), Expect = 3e-04
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 7/118 (5%)
Frame = +1
Query: 172 LVFDPGHHSLRVGYAQEDTPKADIPAVVGV-------GPATHIPNSEXKVPDGNITQTGS 330
++ D G ++GYA D P P V+ GPA S G+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPS-YMASKGSGHLSSK 66
Query: 331 KAGSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHH 504
+A +L +I L G + ++ GQ++NWD E+ K +R E H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDH 124
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 35.9 bits (79), Expect = 0.004
Identities = 33/131 (25%), Positives = 52/131 (39%)
Frame = +1
Query: 109 IKEYIMSGPNGMLYGGDEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNS 288
++E + SGP LV D G LR G+ E PK +V
Sbjct: 6 VREPVFSGPTPSFQNVSNDIPLVIDNGSWQLRAGWGGEKDPKLVFDNLVS---------- 55
Query: 289 EXKVPDGNITQTGSKAGSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYC 468
+ D +++T + G++ I+V + R E + NWDL E++LDY
Sbjct: 56 --RYRDRKLSRTSTLVGNDT--LIEVGSRSIARSPFERNV------ISNWDLMEQVLDYT 105
Query: 469 YSKVIRSPSEH 501
+ K+ EH
Sbjct: 106 FLKLGIDRMEH 116
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 35.9 bits (79), Expect = 0.004
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Frame = +1
Query: 160 EIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKAG 339
E +V D G ++VGYA+++ P+ P++VG I +E K GN+ G
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVG----RPILRAEEKT--GNVQIKDVMVG 55
Query: 340 SELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKM-LDYCYSKVIRSPSEHHPV 510
E + ++ P + + + Q+ ++ FEK+ +D K++ + +PV
Sbjct: 56 DEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPV 113
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 31.1 bits (67), Expect = 0.10
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = +1
Query: 172 LVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKAGSELR 351
+ D G ++ G+A +D PK P VG I + E +P Q GSE +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVG-----RIKH-ERVMPSS--IQKDMFVGSEAQ 63
Query: 352 HYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYS-KVIRSPSEHHPVL 513
+ + L + RP ++ G + NW E++ Y YS + + + E HP+L
Sbjct: 64 NLRGL--LKIQRP-------IERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLL 109
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 30.3 bits (65), Expect = 0.18
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +1
Query: 241 IPAVVGVGPATHIPNSEXKVPDGNITQTGSKAGSELRHYIDVTELHVPRPGMEVXTYMKD 420
+P+ +G A + V DG+ TG + +RH + V + G + + D
Sbjct: 425 VPSAMGYAVAAPERRTIVMVGDGSFQLTGQEISQMIRHKLPVLIFLLNNRGYTIEIQIHD 484
Query: 421 G---QVDNWD 441
G ++ NWD
Sbjct: 485 GPYNRIQNWD 494
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 28.7 bits (61), Expect = 0.55
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +1
Query: 115 EYIMSGPN-GMLYGGDEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSE 291
EY+MSG + G + D++ A + H E P+ AV G+ I N+E
Sbjct: 684 EYVMSGSDDGRFFIWDKLNASILAIIHGDSEAVNVIEGHPRCPTLAVSGIDSTVKIFNTE 743
Query: 292 XKVPDG 309
P G
Sbjct: 744 NTPPSG 749
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 229 PKADIPAVVGVGPATHIPNSEXKVPD 306
PKAD+ +V VG +T IP + V D
Sbjct: 329 PKADVHDIVLVGGSTRIPKVQRLVSD 354
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 6.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 283 NSEXKVPDGNITQTGSKAGSELRHYIDVTELHVPRPGMEVXTYMKDG 423
N V DG+I Q K R + + + H+P+ G+ ++ +DG
Sbjct: 265 NFATAVLDGSI-QFWQKGSRTKRPVMKIKDAHLPQQGISCLSFSQDG 310
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +3
Query: 105 HYKRIYYEWSERHVVRGRRDRCTSL*SWSSF---VAGRLCARG 224
H+K I + W E V G R S+ W F G LCA G
Sbjct: 162 HFKFIVFRWMEWLVFVGLRGLVWSVPLWFLFWPATVGILCAPG 204
>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 506
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 310 NITQTGSKAGSELRHYIDVTELHVPR 387
NI Q + AG+ +RH+ + ++VPR
Sbjct: 362 NIIQLETAAGAAIRHFKNAHGVNVPR 387
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +1
Query: 319 QTGSKAGSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDL 444
Q+ S + HY ++ L G + T DG++ WD+
Sbjct: 327 QSESYVLKQQSHYDALSTLQYSSDGQRIITGADDGKIKVWDM 368
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.137 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,861
Number of Sequences: 5004
Number of extensions: 44779
Number of successful extensions: 117
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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