Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7b07
(515 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 53 1e-07
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_56| Best HMM Match : Actin (HMM E-Value=0) 46 1e-05
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 3e-05
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 45 3e-05
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 34 0.060
SB_42712| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.98
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 30 1.3
SB_18728| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6) 28 5.3
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 27 6.9
SB_48315| Best HMM Match : GASA (HMM E-Value=1.8) 27 6.9
SB_36735| Best HMM Match : Sin_N (HMM E-Value=0.082) 27 9.2
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/36 (61%), Positives = 29/36 (80%)
Frame = +1
Query: 406 TYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVL 513
T +KDG +++WDLFEK+LDY YSK I+S S HP+L
Sbjct: 2 TPIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLL 37
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 46.8 bits (106), Expect = 1e-05
Identities = 36/119 (30%), Positives = 53/119 (44%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKA 336
DEI ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 337 GSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVL 513
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 105
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 46.4 bits (105), Expect = 1e-05
Identities = 35/119 (29%), Positives = 53/119 (44%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKA 336
DE+ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 3 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 54
Query: 337 GSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVL 513
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 55 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 104
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 46.0 bits (104), Expect = 2e-05
Identities = 35/119 (29%), Positives = 53/119 (44%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKA 336
D+I ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 337 GSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVL 513
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 105
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 45.2 bits (102), Expect = 3e-05
Identities = 34/119 (28%), Positives = 53/119 (44%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKA 336
D++ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 3 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 54
Query: 337 GSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVL 513
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 55 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 104
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 45.2 bits (102), Expect = 3e-05
Identities = 34/119 (28%), Positives = 53/119 (44%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKA 336
D++ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 337 GSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVL 513
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 105
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 36.3 bits (80), Expect = 0.015
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 258
D++ ALV D G + G+A +D P+A P++VG
Sbjct: 3 DDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVG 36
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 34.3 bits (75), Expect = 0.060
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 172 LVFDPGHHSLRVGYAQEDTPKADIPAVVG 258
LV D G H +VG+A +D PK P +VG
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVG 1387
>SB_42712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 30.3 bits (65), Expect = 0.98
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Frame = +1
Query: 124 MSGPNGMLYGGDEIGALVFDPGHHSLRVGYAQEDT-PKADIPAVV---------GVGPAT 273
++GP G Y G+ +G P ++ VGYA E P A PA + G+GP
Sbjct: 220 ITGPVG--YAGERLGPTAHAPASNTGPVGYAGEGLGPTAHAPASITGPVGYAGEGLGPTA 277
Query: 274 HIPNS 288
H P S
Sbjct: 278 HAPAS 282
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Frame = +1
Query: 124 MSGPNGMLYGGDEIGALVFDPGHHSLRVGYAQEDT-PKADIPAVV---------GVGPAT 273
++GP G Y G+ +G P + VGYA E P A PA + G+GP
Sbjct: 157 ITGPVG--YAGERLGPTAHAPASITGPVGYADERLGPTAHAPASITGPVGYADEGLGPTA 214
Query: 274 HIPNS 288
H P S
Sbjct: 215 HAPAS 219
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +1
Query: 379 VPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHH 504
+ +P ++ V++WDL E+ + C K +R+ E H
Sbjct: 291 IDKPSYATKWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDH 332
>SB_18728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 259 VGPATHIPNSEXKVPDGNITQTGSKAGSELRHYIDVTEL 375
+GP S+ VP G S+LRH + VTE+
Sbjct: 76 IGPTLEYLASKTSVPPQTGAPVGQNKPSQLRHVVSVTEM 114
>SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)
Length = 722
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 217 QEDTPKADIPAVVGVGPATHIPN--SEXKVPDGNITQTGSKAGSELRH-YIDV 366
QED P+ DIP +V ++++P+ + D N G K+ ++ + Y DV
Sbjct: 307 QEDQPEYDIPVIVEDTDSSYVPDFGDNAQYQDVNGANGGKKSSADEEYIYADV 359
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 27.9 bits (59), Expect = 5.3
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = +1
Query: 172 LVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQ--TGSKAGSE 345
+V D G ++ GYA + P P++VG I S KV D + G +A S+
Sbjct: 9 IVCDNGTGFVKCGYAGSNFPAHIFPSMVG----RPIIRSSQKVGDIEVKDLMVGDEA-SQ 63
Query: 346 LRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSK 477
LR+ ++V + P M +G V NWD + + DY + +
Sbjct: 64 LRYMLEV---NYP---------MDNGIVRNWDDMKHVWDYTFGE 95
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 27.5 bits (58), Expect = 6.9
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 9/112 (8%)
Frame = +1
Query: 193 HSLRVGYAQEDTPKADIPAVVGVG---PATHIPNSEXKVPDGNITQTG--SKAGSELRHY 357
H L G A+ +P A+ G G P+T + +S+ +P+ +T S SE
Sbjct: 1169 HLLAAGDAEHTSPPTTATAMTGSGFVLPSTPVVSSKPILPEPEVTPLPEVSPKSSETVVP 1228
Query: 358 IDVTELHVPRPGMEVXTYM----KDGQVDNWDLFEKMLDYCYSKVIRSPSEH 501
TE V Y K + NW ++EK + + S PS H
Sbjct: 1229 TCTTESPPDVASTPVRRYPRRTPKPVRRVNWSIYEKRVIFTGSSTRSCPSVH 1280
>SB_48315| Best HMM Match : GASA (HMM E-Value=1.8)
Length = 340
Score = 27.5 bits (58), Expect = 6.9
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 9/112 (8%)
Frame = +1
Query: 193 HSLRVGYAQEDTPKADIPAVVGVG---PATHIPNSEXKVPDGNITQTG--SKAGSELRHY 357
H L G A+ +P A+ G G P+T + +S+ +P+ +T S SE
Sbjct: 103 HLLAAGDAEHTSPPTTATAMTGSGFVLPSTPVVSSKPILPEPEVTPLPEVSPKSSETVVP 162
Query: 358 IDVTELHVPRPGMEVXTYM----KDGQVDNWDLFEKMLDYCYSKVIRSPSEH 501
TE V Y K + NW ++EK + + S PS H
Sbjct: 163 TCTTESPPDVASTPVRRYPRRTPKPVRRVNWSIYEKRVIFTGSSTRSCPSVH 214
>SB_36735| Best HMM Match : Sin_N (HMM E-Value=0.082)
Length = 546
Score = 27.1 bits (57), Expect = 9.2
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 214 AQEDTPKADIPAVVGVGPATH-IPNSEXKVPDGNITQTGSKAGSELRHYIDVTELHVPR 387
+QE T +A P V A H IP + +P+ N T S E+ ++D ++HV +
Sbjct: 411 SQETTKRA--PRV-SKHEANHAIPKPQKTLPNMNNNATESSTPMEVEEFVDTGDIHVTK 466
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.137 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,086,066
Number of Sequences: 59808
Number of extensions: 368675
Number of successful extensions: 588
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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