Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7b07
(515 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 98 3e-21
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 46 1e-05
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 46 1e-05
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 46 1e-05
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 46 1e-05
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 46 1e-05
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 46 1e-05
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 45 3e-05
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 45 3e-05
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 45 3e-05
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 40 8e-04
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 37 0.007
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 37 0.007
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 36 0.017
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 36 0.017
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 36 0.023
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 30 0.85
AC006679-2|AAK84465.2| 425|Caenorhabditis elegans Ligand-gated ... 28 4.6
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 98.3 bits (234), Expect = 3e-21
Identities = 47/128 (36%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
Frame = +1
Query: 136 NGMLYGGDEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXK--VPDG 309
+G +YGGDE+ LVFD G S RVG+A E+ PK DIP+ + V A E + + +G
Sbjct: 2 SGAVYGGDEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEG 61
Query: 310 NITQTGSKAGSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRS 489
+ ++ +K E +I T++ VPR + ++MK+G +++W+LFEK++++ Y ++ S
Sbjct: 62 DNSKVQTK--REKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSYENILYS 119
Query: 490 PSEHHPVL 513
HPVL
Sbjct: 120 NPSEHPVL 127
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 46.4 bits (105), Expect = 1e-05
Identities = 35/119 (29%), Positives = 53/119 (44%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKA 336
DE+ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 337 GSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVL 513
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 105
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 46.4 bits (105), Expect = 1e-05
Identities = 35/119 (29%), Positives = 53/119 (44%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKA 336
DE+ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 337 GSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVL 513
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 105
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 46.4 bits (105), Expect = 1e-05
Identities = 35/119 (29%), Positives = 53/119 (44%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKA 336
DE+ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 337 GSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVL 513
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 105
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 46.4 bits (105), Expect = 1e-05
Identities = 35/119 (29%), Positives = 53/119 (44%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKA 336
DE+ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 337 GSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVL 513
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 105
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 46.4 bits (105), Expect = 1e-05
Identities = 35/119 (29%), Positives = 53/119 (44%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKA 336
DE+ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 337 GSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVL 513
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 105
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 46.4 bits (105), Expect = 1e-05
Identities = 35/119 (29%), Positives = 53/119 (44%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKA 336
DE+ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 337 GSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVL 513
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 105
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 45.2 bits (102), Expect = 3e-05
Identities = 35/119 (29%), Positives = 53/119 (44%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKA 336
+EI ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 3 EEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 54
Query: 337 GSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVL 513
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 55 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVL 104
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 45.2 bits (102), Expect = 3e-05
Identities = 34/119 (28%), Positives = 53/119 (44%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKA 336
D++ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 337 GSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVL 513
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 105
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 45.2 bits (102), Expect = 3e-05
Identities = 33/119 (27%), Positives = 53/119 (44%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKA 336
D++ AL+ D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 337 GSELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVL 513
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 105
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 40.3 bits (90), Expect = 8e-04
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Frame = +1
Query: 160 EIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKAG 339
++ A V D G ++GYA P+ IP+ + V NS+ + + AG
Sbjct: 5 QLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVG-----AG 59
Query: 340 -SELRHYIDVTELHVPRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHH 504
+L +I L V ++ G V++WDL E+ + C K +R+ E H
Sbjct: 60 IDDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDH 115
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 37.1 bits (82), Expect = 0.007
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 258
DE+ ALV D G + G+A +D P+A P++VG
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 37.1 bits (82), Expect = 0.007
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 258
DE+ ALV D G + G+A +D P+A P++VG
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 35.9 bits (79), Expect = 0.017
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 258
D++ ALV D G + G+A +D P+A P++VG
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 35.9 bits (79), Expect = 0.017
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 157 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 258
D++ ALV D G + G+A +D P+A P++VG
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 35.5 bits (78), Expect = 0.023
Identities = 29/104 (27%), Positives = 45/104 (43%)
Frame = +1
Query: 202 RVGYAQEDTPKADIPAVVGVGPATHIPNSEXKVPDGNITQTGSKAGSELRHYIDVTELHV 381
R G+A +D P+A P++VG P + + + Q S G E + + L
Sbjct: 5 RAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYVGDEAQSKRGILTLKY 56
Query: 382 PRPGMEVXTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVL 513
P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 57 P---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 91
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 412 MKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVL 513
++ G V NWD EK+ + + +R E HPVL
Sbjct: 28 IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 61
>AC006679-2|AAK84465.2| 425|Caenorhabditis elegans Ligand-gated ion
channel protein 12 protein.
Length = 425
Score = 27.9 bits (59), Expect = 4.6
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -3
Query: 285 IWDVCSWPDAHNCWYISFWGILLRITYPQRMMTRIKD*CTYLVSPVQHA-VRTTHNI-FF 112
IW SW D + W W + +IT P+ M+ + D Y+ + V+ HN+
Sbjct: 79 IWFPQSWKDDYLVWDPDEWDGIEKITIPKSMVW-LPD--GYIFNTVEETDTLDNHNVRVH 135
Query: 111 YNAIVEMLFS 82
YN VE+ F+
Sbjct: 136 YNGKVEVDFN 145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.137 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,464,283
Number of Sequences: 27780
Number of extensions: 271260
Number of successful extensions: 456
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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