Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7b06
(723 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024824-2|AAK85502.1| 740|Caenorhabditis elegans Hypothetical ... 31 0.63
Z68159-7|CAA92286.1| 604|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z83224-1|CAB05720.1| 994|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81544-6|CAI46607.1| 376|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z79754-14|CAB02102.1| 994|Caenorhabditis elegans Hypothetical p... 29 4.4
Z75533-2|CAA99816.1| 245|Caenorhabditis elegans Hypothetical pr... 28 5.9
U40800-8|ABB51192.1| 349|Caenorhabditis elegans Hypothetical pr... 28 5.9
AY305837-1|AAR11982.1| 376|Caenorhabditis elegans nuclear recep... 28 7.8
AF016443-4|AAC24282.2| 376|Caenorhabditis elegans Nuclear hormo... 28 7.8
>AC024824-2|AAK85502.1| 740|Caenorhabditis elegans Hypothetical
protein Y55B1BR.2 protein.
Length = 740
Score = 31.5 bits (68), Expect = 0.63
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +1
Query: 214 MYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKT 393
+ +++ DER + FA + + +NN+KS A ST K R+I ++ S I+
Sbjct: 75 LQSMKNLVDERITEITHHEFADLKKGMNNVKS-----SATSSTDKK-RKIGEDEDSQIEV 128
Query: 394 RIEKQLQ-FLTPLNKNFITYSVEDSISSNEVLDNI 495
+ +K+ + ++ P + T+S E + D +
Sbjct: 129 KRKKESRNYIPPSTPDSGTHSTESDMIEEPNSDEV 163
>Z68159-7|CAA92286.1| 604|Caenorhabditis elegans Hypothetical
protein C33D9.8 protein.
Length = 604
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +1
Query: 283 LQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFL---TPLNKNFITYS 453
L +L N K K+E+YE Q K ++ R +++++ +Q + LN +
Sbjct: 115 LSKLQNAKDKLEIYETQEENQKLEAEVNALRKEVLESKLSEQSELSKVNETLNMKVESLK 174
Query: 454 VEDSIS 471
+E+ +S
Sbjct: 175 IEEGVS 180
>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical protein
K12D12.1 protein.
Length = 1520
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +1
Query: 322 YEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQ----FLTPLNKNFITYSVEDSISSNEVLD 489
YE ++S K R K+ + +++K+ Q F++P D +S ++ +
Sbjct: 1287 YE-KMSQPKKERVKKEPKEPKEPKKVKKEGQDIKKFMSPAAPKTAKKEKSDGFNS-DMSE 1344
Query: 490 NIDLEYDDGVDFDVYDE 540
D+E+D+G+DFD D+
Sbjct: 1345 ESDVEFDEGIDFDSDDD 1361
>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical protein
K12D12.1 protein.
Length = 1520
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +1
Query: 322 YEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQ----FLTPLNKNFITYSVEDSISSNEVLD 489
YE ++S K R K+ + +++K+ Q F++P D +S ++ +
Sbjct: 1287 YE-KMSQPKKERVKKEPKEPKEPKKVKKEGQDIKKFMSPAAPKTAKKEKSDGFNS-DMSE 1344
Query: 490 NIDLEYDDGVDFDVYDE 540
D+E+D+G+DFD D+
Sbjct: 1345 ESDVEFDEGIDFDSDDD 1361
>Z83224-1|CAB05720.1| 994|Caenorhabditis elegans Hypothetical
protein F25H2.13 protein.
Length = 994
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 307 SKIELYEAQVSTCKNVRQIKQNRSSNIKTRI 399
SK E + Q CK+ RQ+KQ +S+ K I
Sbjct: 774 SKTEYIKKQAKQCKSFRQVKQTAASDSKDDI 804
>Z81544-6|CAI46607.1| 376|Caenorhabditis elegans Hypothetical
protein F49C5.9 protein.
Length = 376
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 91 GVKLLGTCALIILLSTTNTVVGRDRITFTPIEDSAGLVFER 213
G+ +LG CA+I LS N V F ++ +F++
Sbjct: 164 GILILGNCAIIFKLSAQNDQVKMQNDVFEKVDPRCAEIFQK 204
>Z79754-14|CAB02102.1| 994|Caenorhabditis elegans Hypothetical
protein F25H2.13 protein.
Length = 994
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 307 SKIELYEAQVSTCKNVRQIKQNRSSNIKTRI 399
SK E + Q CK+ RQ+KQ +S+ K I
Sbjct: 774 SKTEYIKKQAKQCKSFRQVKQTAASDSKDDI 804
>Z75533-2|CAA99816.1| 245|Caenorhabditis elegans Hypothetical
protein C54G4.3 protein.
Length = 245
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/97 (22%), Positives = 46/97 (47%)
Frame = +1
Query: 205 FERMYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSN 384
F+R+ G+ H DE+ + N + Q++ K+ + A K+V+ +++
Sbjct: 41 FDRIRGMMHELDEQIHKDRSGNSKWMNQKMEKAKATADQALASTLMVKDVQLLEK----- 95
Query: 385 IKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNI 495
K I K + + +NK+F Y E + N+++D +
Sbjct: 96 -KVNILK--ESVVQVNKSF--YKYEKDVDMNDLMDQV 127
>U40800-8|ABB51192.1| 349|Caenorhabditis elegans Hypothetical
protein D2096.7b protein.
Length = 349
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = +1
Query: 361 IKQNRSSNIKTRIEKQLQFLTPLNKNF--ITYSVEDSISSNEVLDNIDLEYDDGVDFD-V 531
I+ R ++KTR+ +++ FL + NF + ++ + +S ++ + G F+
Sbjct: 31 IENERRYDVKTRLCERIAFLIYQDSNFGRLPHNSSEVFAS---INRLCKSMPTGFSFEGR 87
Query: 532 YDEYEPSSHWSNMTVSDAKALLQNPPKDRVMFLDTVTTN 648
Y Y+P + T SD N +R++ ++T+
Sbjct: 88 YSNYDPETFVGPSTTSDTLQNFPNHSLERILCATLLSTS 126
>AY305837-1|AAR11982.1| 376|Caenorhabditis elegans nuclear receptor
NHR-124 protein.
Length = 376
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = -1
Query: 645 GGDRVQKHYSVFGRVLEQSFRVGYSHVAPMRGRFVFIVNVKINAVVIFQIDVVQ---HFV 475
G D + +H V+ R+L Q V P R + +N +++ + VVQ +
Sbjct: 297 GQDLLSRHQQVYARILLQMCMVSNPRTGPGRYAAILAINQRLDRQSVITNRVVQCLREYW 356
Query: 474 A*NAVFHRVCDE 439
A N F ++ E
Sbjct: 357 APNFFFSKILTE 368
>AF016443-4|AAC24282.2| 376|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 124 protein.
Length = 376
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = -1
Query: 645 GGDRVQKHYSVFGRVLEQSFRVGYSHVAPMRGRFVFIVNVKINAVVIFQIDVVQ---HFV 475
G D + +H V+ R+L Q V P R + +N +++ + VVQ +
Sbjct: 297 GQDLLSRHQQVYARILLQMCMVSNPRTGPGRYAAILAINQRLDRQSVITNRVVQCLREYW 356
Query: 474 A*NAVFHRVCDE 439
A N F ++ E
Sbjct: 357 APNFFFSKILTE 368
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,059,345
Number of Sequences: 27780
Number of extensions: 304248
Number of successful extensions: 944
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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