Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7b04
(746 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022) 35 0.081
SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_17671| Best HMM Match : 7tm_1 (HMM E-Value=0.00083) 30 2.3
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042) 29 4.0
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_18177| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_12773| Best HMM Match : DUF1480 (HMM E-Value=2.1) 28 9.2
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0) 28 9.2
>SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)
Length = 616
Score = 34.7 bits (76), Expect = 0.081
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 520 LRRNAILVLLRSTIHTFNGVIFLT*QRIVIANVNLTVHVIR--DTLTMVRARQRLVGVSD 693
+R + +V +R +H V +VI NL V IR T+ ++RA LV + D
Sbjct: 295 IRADVHVVTIRGNLHV---VTIRANLHVVIIRANLHVVTIRANSTVPIIRANLHLVTIRD 351
Query: 694 NLHVV 708
NLHVV
Sbjct: 352 NLHVV 356
>SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 31.5 bits (68), Expect = 0.75
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 2/124 (1%)
Frame = -3
Query: 741 QERSQEQRVSEDNVQIIGNA-NEPLTRTYHSQG-VTYHVHGQVNISNDDPLLSQEDDTIE 568
Q+ ++ R D+VQ+ N+ N + + ++ V HV G V + D E D +
Sbjct: 213 QKLEEKTRSVLDSVQVTENSYNNAVKKIVEARKRVREHVSGLVRVLRD-----HERDMVS 267
Query: 567 SVDRASQQYQNSIASETAAQRALQRGLDLESQLMSEIXXXXXXXXXXXXSNDVLSQSPDL 388
+DR +NSI SE +Q + L ++ + ++ D+ + +L
Sbjct: 268 ELDRVQIDLRNSILSEKKSQETHLKQLLRATESIHDVMARELDIELLDLQRDITKRMEEL 327
Query: 387 FDSP 376
+ P
Sbjct: 328 LNIP 331
>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = -3
Query: 291 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKCFCSASSSD 133
C ICF L+D VT+ C H C +C V I +N T C + D
Sbjct: 57 CGICFGVLEDP------LVTT--CGHVFCSQCLVHWIAENGTCPLTCEQLAID 101
>SB_17671| Best HMM Match : 7tm_1 (HMM E-Value=0.00083)
Length = 585
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = -3
Query: 717 VSEDNVQIIGNANEPLTRTYHSQGVTYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQ 538
+S DN II + N + + + + YH + ++IS+D+ ++ D+T S + +
Sbjct: 462 ISSDNTIIIYHDNTTTSISSDNTIIIYHDNTTISISSDNTIIIYHDNTTISSNIIIIYHD 521
Query: 537 NSIAS 523
N+I S
Sbjct: 522 NTIIS 526
>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
Length = 623
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 222 CNHAVCFKCYVRI-IMDNSTYKCFCSASSSDFRVYN 118
C+H VC+KC VR+ ++ Y C + S + N
Sbjct: 29 CDHPVCYKCCVRMRVLKQENYCTVCRSELSMIFIKN 64
>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 222 CNHAVCFKCYVRI-IMDNSTYKCFCSASSS 136
C+H VC+KC VR+ ++ Y C + S
Sbjct: 29 CDHPVCYKCCVRMRVLKQENYCTVCRSELS 58
>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3259
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 534 SIASETAAQRALQRGLDLESQLMSE 460
SI S T+ QR + RG+ +SQL+SE
Sbjct: 2851 SIDSSTSGQREMDRGVKKKSQLLSE 2875
>SB_18177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1050
Score = 27.9 bits (59), Expect = 9.2
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +2
Query: 365 CGDCGESNKSGDC 403
CG+CG +++SGDC
Sbjct: 131 CGNCGRTHESGDC 143
>SB_12773| Best HMM Match : DUF1480 (HMM E-Value=2.1)
Length = 505
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 520 LRRNAILVLLRSTIHTFNG--VIFLT*QRIVIANVNLTVHVIRDTLTMVRARQRLVGVSD 693
+ N I ++ +TI N + + I I N N V DT+ ++ A + ++
Sbjct: 397 INANTIAIINANTIAIINANTIAIINANTIAIINANTIAIVNADTIAIINANTIAIINAN 456
Query: 694 NLHVVFADTLLL 729
+ ++ ADT+ +
Sbjct: 457 TIAIINADTIAI 468
>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1981
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 444 ETLGKFHSSVVTQD--LNLAAEPSAQLSPTQCYS 539
E LG + ++V Q+ LNLA+ +L+ TQ YS
Sbjct: 1010 ELLGNYEQAIVCQEQNLNLASHMGDRLAKTQAYS 1043
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,125,698
Number of Sequences: 59808
Number of extensions: 367148
Number of successful extensions: 1298
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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