Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7b04
(746 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical pr... 40 0.002
AL032651-2|CAB60579.1| 272|Caenorhabditis elegans Hypothetical ... 35 0.053
AF016677-4|AAL11109.2| 304|Caenorhabditis elegans Hypothetical ... 33 0.28
Z81117-11|CAC42336.1| 383|Caenorhabditis elegans Hypothetical p... 31 1.1
Z81117-10|CAB03311.1| 384|Caenorhabditis elegans Hypothetical p... 30 1.5
U21282-1|AAA84395.1| 385|Caenorhabditis elegans cyclin B3 protein. 30 1.5
D38632-1|BAA07612.1| 672|Caenorhabditis elegans OSM-3 (kinesin ... 30 1.5
Z68751-4|CAA92974.1| 425|Caenorhabditis elegans Hypothetical pr... 30 2.0
AL132948-9|CAC51067.1| 256|Caenorhabditis elegans Hypothetical ... 29 2.6
AF016677-7|AAB66144.1| 292|Caenorhabditis elegans Hypothetical ... 29 3.5
Z99278-7|CAB16488.1| 382|Caenorhabditis elegans Hypothetical pr... 29 4.6
U70851-2|AAM97996.1| 671|Caenorhabditis elegans Osmotic avoidan... 29 4.6
U70851-1|AAM97997.1| 699|Caenorhabditis elegans Osmotic avoidan... 29 4.6
AF149285-1|AAF99084.1| 672|Caenorhabditis elegans Osm-3 protein. 29 4.6
AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical ... 28 6.1
U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical pr... 28 8.1
AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 28 8.1
AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 28 8.1
>U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical
protein C28G1.5 protein.
Length = 101
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -3
Query: 291 CNICFTTLKDTKNVDSSFVT-SIDCNHAVCFKCYVRIIMDNSTYKC-FC 151
C ICF DT DS + ++ C HA+C KC + +++NST +C FC
Sbjct: 6 CKICFDRFSDT---DSEHIPRNLTCGHALCHKC-ITAMVNNSTVECPFC 50
>AL032651-2|CAB60579.1| 272|Caenorhabditis elegans Hypothetical
protein Y6D1A.2 protein.
Length = 272
Score = 35.1 bits (77), Expect = 0.053
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -3
Query: 291 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKC 157
C IC +DTK +DC H +C +C RI +KC
Sbjct: 183 CEICSREYEDTKE---RVPRVLDCGHTICHECITRIHKPTEPFKC 224
>AF016677-4|AAL11109.2| 304|Caenorhabditis elegans Hypothetical
protein ZK1240.3 protein.
Length = 304
Score = 32.7 bits (71), Expect = 0.28
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = -3
Query: 291 CNICFTTLKDTKNVDSSFVTSI-DCNHAVCFKCYVRIIMDNSTYKCFCSASSS--DFRVY 121
C IC K+ N+D + I C H++C C ++I ++ Y FC ++ D +V
Sbjct: 6 CEIC---CKEYSNIDQNHSPKILKCGHSICQICAAKLITNSCIYCPFCRETTKIRDGKVE 62
Query: 120 NKHGYVEFMPLTLIRNRDSIKQ 55
N M I + KQ
Sbjct: 63 NLKKNFGLMKAIEIMKNSTTKQ 84
>Z81117-11|CAC42336.1| 383|Caenorhabditis elegans Hypothetical
protein T06E6.2b protein.
Length = 383
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = -3
Query: 744 RQERSQEQRVSEDNVQIIGNANEPLTRTYHSQGVT---YHVHG-QVNISNDDPL 595
+ R Q++R + + + N +EP + HS+G+T H+ G +++ + DPL
Sbjct: 14 QDSRHQQKRKQAEQLDALKNPSEPAAKKQHSKGLTELRAHISGFKIDSAKRDPL 67
>Z81117-10|CAB03311.1| 384|Caenorhabditis elegans Hypothetical
protein T06E6.2a protein.
Length = 384
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = -3
Query: 735 RSQEQRVSEDNVQIIGNANEPLTRTYHSQGVT---YHVHG-QVNISNDDPL 595
R Q++R + + + N +EP + HS+G+T H+ G +++ + DPL
Sbjct: 18 RHQQKRKQAEQLDALKNPSEPAAKKQHSKGLTELRAHISGFKIDSAKRDPL 68
>U21282-1|AAA84395.1| 385|Caenorhabditis elegans cyclin B3 protein.
Length = 385
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = -3
Query: 735 RSQEQRVSEDNVQIIGNANEPLTRTYHSQGVT---YHVHG-QVNISNDDPL 595
R Q++R + + + N +EP + HS+G+T H+ G +++ + DPL
Sbjct: 19 RHQQKRKQAEQLDALKNPSEPAAKKQHSKGLTELRAHISGFKIDSAKRDPL 69
>D38632-1|BAA07612.1| 672|Caenorhabditis elegans OSM-3 (kinesin
protein) protein.
Length = 672
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/83 (22%), Positives = 35/83 (42%)
Frame = -3
Query: 744 RQERSQEQRVSEDNVQIIGNANEPLTRTYHSQGVTYHVHGQVNISNDDPLLSQEDDTIES 565
R S E+ ++ +I G +E L V++ +N+ DDPLL T E
Sbjct: 411 RTSFSIEEERKKNTGRIRGGGDERLAWRQACNAVSF---SPLNVHKDDPLLQVYSTTQEK 467
Query: 564 VDRASQQYQNSIASETAAQRALQ 496
+D + Q + + +R ++
Sbjct: 468 LDAVTSQLEKEVKKSKGYEREIE 490
>Z68751-4|CAA92974.1| 425|Caenorhabditis elegans Hypothetical
protein T05E11.4 protein.
Length = 425
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = -3
Query: 639 YHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASET 517
YH Q ++S DD +++DD I+S A +++QN I +++
Sbjct: 386 YHEDSQCSLSTDDDREAKDDDYIDS--DAEEKFQNMIDNDS 424
>AL132948-9|CAC51067.1| 256|Caenorhabditis elegans Hypothetical
protein Y39B6A.10 protein.
Length = 256
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = -3
Query: 270 LKDTKNVDSSFVTSIDCNHAVCFKCYVRIIM-DNSTYKCFCSASSSDFRVYNKHGYVEFM 94
LK T+N++ S + + A+C K V + + D + ++ F S R+ K
Sbjct: 115 LKITENLEKSIIDYL----ALCQKLPVLVTLRDVTEFQIFAQKSEVPLRIQYKK-----R 165
Query: 93 PLTLIRNRDSIKQHWRELLENNTVNNRIIDF 1
L ++R +++KQ + ++L N+T +I F
Sbjct: 166 KLKILRISENLKQFFTKMLGNSTSGTHLIYF 196
>AF016677-7|AAB66144.1| 292|Caenorhabditis elegans Hypothetical
protein ZK1240.8 protein.
Length = 292
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 291 CNICFTTLKDTKNVDSSFVTSI-DCNHAVCFKCYVRIIMDNSTYKC 157
C +C +D N+D S + C H++C C V++I NS C
Sbjct: 6 CEVCN---EDYSNLDESRAPRVLKCGHSICQNCAVKLI-SNSVILC 47
>Z99278-7|CAB16488.1| 382|Caenorhabditis elegans Hypothetical
protein Y53C12B.6 protein.
Length = 382
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -3
Query: 219 NHAVCFKCYVRIIMDNSTYKC---FCSASSSDFRVYNKHGYVEFMPLTLIRNR 70
NH V FKC +RI + N + +C CS + S + K V P L++ +
Sbjct: 258 NHIVYFKCNIRITVKNPSGECPVNNCSPNGSTGLISRKARDVFEHPFLLLKQK 310
>U70851-2|AAM97996.1| 671|Caenorhabditis elegans Osmotic avoidance
abnormal protein3, isoform a protein.
Length = 671
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -3
Query: 642 TYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ 496
T + +N+ DDPLL T E +D + Q + + +R ++
Sbjct: 440 TQKLAAALNVHKDDPLLQVYSTTQEKLDAVTSQLEKEVKKSKGYEREIE 488
>U70851-1|AAM97997.1| 699|Caenorhabditis elegans Osmotic avoidance
abnormal protein3, isoform b protein.
Length = 699
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -3
Query: 642 TYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ 496
T + +N+ DDPLL T E +D + Q + + +R ++
Sbjct: 468 TQKLAAALNVHKDDPLLQVYSTTQEKLDAVTSQLEKEVKKSKGYEREIE 516
>AF149285-1|AAF99084.1| 672|Caenorhabditis elegans Osm-3 protein.
Length = 672
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -3
Query: 642 TYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ 496
T + +N+ DDPLL T E +D + Q + + +R ++
Sbjct: 440 TQKLAAALNVHKDDPLLQVYSTTQEKLDAVTSQLEKEVKKSKGYEREIE 488
>AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical
protein F42G2.5 protein.
Length = 374
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 291 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKC-FC 151
C IC TL+ + VD+ + C H++C C + + N C FC
Sbjct: 134 CEIC--TLEFSSVVDNQIPRILQCGHSICQSCASK-LAKNCVILCPFC 178
>U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical
protein T20F5.6 protein.
Length = 794
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = -3
Query: 294 SCNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRII 181
SC IC+ K + F C H +C +C +++
Sbjct: 115 SCGICYDPFNTGKRIPKVF----PCGHTICLQCIKKLL 148
>AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory
carrier membrane protein protein.
Length = 335
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 567 SVDRASQQYQNSIASETAAQRALQ 496
S+D+A Q++ N + S+ QRA Q
Sbjct: 293 SIDKARQEFTNGVMSDAGVQRATQ 316
>AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synaptic
vesicle protein)homolog protein 1 protein.
Length = 335
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 567 SVDRASQQYQNSIASETAAQRALQ 496
S+D+A Q++ N + S+ QRA Q
Sbjct: 293 SIDKARQEFTNGVMSDAGVQRATQ 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,962,510
Number of Sequences: 27780
Number of extensions: 257773
Number of successful extensions: 867
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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