Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7a24
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    33   0.030
SPBC21H7.06c |||inositol metabolism protein Opi10 |Schizosacchar...    27   2.0  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    27   2.6  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   4.5  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   6.0  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   7.9  

>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -1

Query: 644 NLDKTKATKIVDNTKNVTKT*NVSSENTSVNAGI*RYISSMTSRFPLGFAISAF 483
           NLD+ K     DN  + +   ++SS NTS+ +    ++S    RF L F I AF
Sbjct: 323 NLDEFKPADGADNEDSKSLVSHISSSNTSLFSNFTFFLSREVPRFSLEFVIRAF 376


>SPBC21H7.06c |||inositol metabolism protein Opi10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +2

Query: 239 NPNCSVKTEVLCDRSEPTVEITLLPAIAATA-KIQKVTLRSENLTCLEILQLLNKHISSL 415
           N NC   T +L    EP    T  PA++ +A  +    L        +IL  L   ++S 
Sbjct: 90  NENCVGITAMLGISVEPLTNFTETPAVSTSASNVIAKPLPPVTSVAQKILTNLYNFLASF 149

Query: 416 APVELPP 436
           A  +LPP
Sbjct: 150 ATSQLPP 156


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 113 QLKAVNLKAAKKITIKFDPFGENATHTRNFAHYISAPKIAITNPNCSVKTE 265
           +L  ++L  A  IT+K +P   +A  T +F  ++S P   I + N + K E
Sbjct: 700 KLCKLDLAKANSITLKSEP--SSAVSTHSFEVHLSMPGTQIKSANLAEKME 748


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 576  HILCFCYVFCVVYNFSCLCFVQVHYHKTC 662
            H + +  +  +V N  CL F   HY   C
Sbjct: 1115 HAIAYAVLHHLVSNIGCLGFFSTHYQSLC 1143


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 268 HFGLHRAIGICDCYFRCTDVMSKI 197
           HF     I IC CY+R  D  S I
Sbjct: 585 HFSFRSQILICWCYYRLNDFKSLI 608


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 280  PVTQHFGLHRAIGICDCYFRCTDVMSKIPCVSCVFSKWIKFYGNFFSS 137
            PV  + G    +G   C+++C D  S I  +  + S + K   N FS+
Sbjct: 1114 PVDANLGKILVLG---CFYKCVDAASSIVAMLTIGSPFRKSVDNEFSA 1158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,723
Number of Sequences: 5004
Number of extensions: 52371
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)