Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7a24
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              29   2.8  
SB_27302| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     29   3.6  
SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = +3

Query: 561 CILRRHILCFCYVFCVVYNFSCLCFVQVHYHKTCRIDC 674
           C    +   +CY +C    + C C+   H++  C   C
Sbjct: 482 CYCYYYCYYYCYCYCYYCCYYCYCYYYYHHYYCCYYCC 519


>SB_27302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 181 RNSHKEFCSLHQCT*NS-NHKSQLLCEDRSVV*QE*ANSRNNTLACNCSNCKNTESDFK 354
           RN++    S++ C  NS N+++     +RS       N+R+NT   N S+  N  SD K
Sbjct: 83  RNNNNNNNSINNCNNNSINNRNNNSINNRSNTNNNSINNRSNTNRINSSSNNNDNSDNK 141


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +3

Query: 561 CILRRHILCFCYVFCVVYNFSCLCFVQVHYHKTC 662
           C    H  C+C+     Y     C+ + HYH  C
Sbjct: 16  CYRHHHYCCYCHHRYCYYRHHHYCWYRHHYHYPC 49


>SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 349 SHFLYFCSCCNCRQECYFYCWLTPVTQHFGLHRAIGICD 233
           S  +YF +      EC  Y  +T VT++   H+   +CD
Sbjct: 623 SDSVYFENPYKVSSECNSYAQITDVTRNINQHKTATVCD 661


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,388,160
Number of Sequences: 59808
Number of extensions: 378083
Number of successful extensions: 1024
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)