Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7a24
(701 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47075-4|CAE17757.1| 129|Caenorhabditis elegans Hypothetical pr... 61 9e-10
Z22177-9|CAE18052.1| 110|Caenorhabditis elegans Hypothetical pr... 46 3e-05
U52072-1|AAD11465.1| 97|Caenorhabditis elegans dauer-upregulat... 29 2.4
Z82084-2|CAB04976.1| 536|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF100662-1|AAC68977.1| 900|Caenorhabditis elegans Hypothetical ... 28 5.6
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p... 28 7.4
Z35663-1|CAA84725.1| 324|Caenorhabditis elegans Hypothetical pr... 28 7.4
U64837-3|AAB04837.1| 782|Caenorhabditis elegans Hypothetical pr... 28 7.4
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein. 28 7.4
AL110477-15|CAB54331.2| 295|Caenorhabditis elegans Hypothetical... 27 9.8
>Z47075-4|CAE17757.1| 129|Caenorhabditis elegans Hypothetical
protein E02H1.8 protein.
Length = 129
Score = 60.9 bits (141), Expect = 9e-10
Identities = 33/94 (35%), Positives = 49/94 (52%)
Frame = +2
Query: 119 KAVNLKAAKKITIKFDPFGENATHTRNFAHYISAPKIAITNPNCSVKTEVLCDRSEPTVE 298
+A+NL+ K I I DP + R F H I APK+ +TNPN VKT++ DR P
Sbjct: 25 RALNLQKVKSIDISLDPLHHDNLSIRTFWHSIMAPKVRLTNPNVRVKTDIRNDRRAPFFV 84
Query: 299 ITLLPAIAATAKIQKVTLRSENLTCLEILQLLNK 400
TL QK+ +EN+T ++++ N+
Sbjct: 85 ATLDDG-------QKLHFSTENMTAMDVIMNFNR 111
>Z22177-9|CAE18052.1| 110|Caenorhabditis elegans Hypothetical
protein ZK512.11 protein.
Length = 110
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/72 (27%), Positives = 39/72 (54%)
Frame = +1
Query: 484 KAEMAKPKGNLDVIEEIYRQIPAFTDVFSEDTFYVFVTFFVLSTILVAFVLSRFITIKPV 663
K + K + LDV+ ++ + +P F ++F E+TFYVF VL ++ V+++ +K
Sbjct: 16 KRKNGKTRLMLDVVHQMNQAVPTFNELFDEETFYVFAFLVVLVAVIFVIVMAKCFNVKIK 75
Query: 664 E*IVTFKLKYND 699
E + ++ D
Sbjct: 76 EYDIDIDREWRD 87
>U52072-1|AAD11465.1| 97|Caenorhabditis elegans dauer-upregulated
protein 191 protein.
Length = 97
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 510 SFRFCHLCFYFVFVFFLS 457
SF FC+ CF +FVFF S
Sbjct: 51 SFFFCYFCFVILFVFFSS 68
>Z82084-2|CAB04976.1| 536|Caenorhabditis elegans Hypothetical
protein ZK1053.2 protein.
Length = 536
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 534 ISSNTSIY*CILRRHILCFCYVFCVVYNFSC 626
I +N IY +L I CFC C+++ + C
Sbjct: 384 IDANILIYILLLVLLIWCFCIALCLIWMYVC 414
>AF100662-1|AAC68977.1| 900|Caenorhabditis elegans Hypothetical
protein H34C03.2 protein.
Length = 900
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 74 IRRSKGVVSAIGKQLKAVNL-KAAKKITIKFDPFG 175
+R +V + QLK+ + +KI+IKFDPFG
Sbjct: 415 MRNDSIIVDTLHGQLKSTLICPVCEKISIKFDPFG 449
>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
protein F43G9.6 protein.
Length = 2034
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 561 CILRRHILCFCYVFCVVYNFSCLC 632
C RR LC C +FC + CLC
Sbjct: 1847 CCTRRGCLCKCCIFC--FETKCLC 1868
>Z35663-1|CAA84725.1| 324|Caenorhabditis elegans Hypothetical
protein T04A8.1 protein.
Length = 324
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = -3
Query: 492 LCFYFVFVFFLSDLV-CSVVGGSSTGAKEEMCLFNNWRISRQVRFSLLKVTFCIFAVAAI 316
LCF V +FF++ ++ +++ A+ + + + V F+ +++ F FA
Sbjct: 211 LCFVLVIIFFVATILGLTMLKQRIKSAERSLTIVTMIMAVQTVTFASIQIYFVFFAAYTP 270
Query: 315 AGKSVISTVGSLLSHNTSVFT 253
+SV+ + S + + VF+
Sbjct: 271 KIRSVLLQIVSFVFDSLYVFS 291
>U64837-3|AAB04837.1| 782|Caenorhabditis elegans Hypothetical
protein T27E4.6 protein.
Length = 782
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = -3
Query: 492 LCFYFVFVFFLSDLVCSVVGGSSTGAKEEMCLFNNWRISRQVRFSLLKVTFCI-FAVAAI 316
LC Y++ + +S+ V A +EMC W ++ +F++ F + F + +
Sbjct: 447 LCTYWMDIIHISNFV----------AVDEMCYLPAWHLAVDFQFTIFAPFFLLAFHYSTV 496
Query: 315 AGKSVISTVGSLLSHNTSVF 256
G ++++ + SL+ +VF
Sbjct: 497 LG-TILAIIASLIGSGLTVF 515
>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
Length = 2034
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 561 CILRRHILCFCYVFCVVYNFSCLC 632
C RR LC C +FC + CLC
Sbjct: 1847 CCTRRGCLCKCCIFC--FETKCLC 1868
>AL110477-15|CAB54331.2| 295|Caenorhabditis elegans Hypothetical
protein Y113G7B.9 protein.
Length = 295
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -3
Query: 420 GAKEEMCLFNNWRISRQVRFSLLKVTFCIFAVAAIAGKSV 301
G C F+ W I R + FSL+ + I ++ + SV
Sbjct: 162 GCATNQCFFHYWLIQRSIIFSLIVLFSLILSIKLLMMNSV 201
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,875,103
Number of Sequences: 27780
Number of extensions: 309071
Number of successful extensions: 943
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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