Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7a24
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    27   0.17 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.92 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.6  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = -3

Query: 186 VAFSPNGSNFMVIFLAAFKLTAFSCFPMAETTPLDLLIVPLYGIDIIY 43
           V + P   N+         LT ++ FP+ E + +   ++P+  I ++Y
Sbjct: 185 VEYPPESGNYSADSAMCAMLTIYADFPLYELSTIIFFLIPMLIILVVY 232


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 23/73 (31%), Positives = 36/73 (49%)
 Frame = +1

Query: 466 EDKNKIKAEMAKPKGNLDVIEEIYRQIPAFTDVFSEDTFYVFVTFFVLSTILVAFVLSRF 645
           E+K K K +   P  N+ V  ++   + A  D+F  DT Y + T   L+  +V + +  F
Sbjct: 465 EEKRKNKNKNLTPAVNIIVKGDVAGSVEALLDIF--DT-YTYDTICQLN--IVHYGIG-F 518

Query: 646 ITIKPVE*IVTFK 684
           IT   +E   TFK
Sbjct: 519 ITQSDIELANTFK 531


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 651 GNEPGQNKGN*NCRQHKKRNKN 586
           GN+   NK N N +   KRN N
Sbjct: 497 GNKQNDNKQNGNRQNDNKRNGN 518


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 172 KWIKFYGNFFSSL 134
           KW+  +GNF  SL
Sbjct: 574 KWLDIHGNFIESL 586


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = +3

Query: 582 LCFCYVFCVVYNFSCLCFV 638
           +C C+++  +  F C+ +V
Sbjct: 369 VCMCFIYASLLEFVCVNYV 387


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = +3

Query: 582 LCFCYVFCVVYNFSCLCFV 638
           +C C+++  +  F C+ +V
Sbjct: 338 VCMCFIYASLLEFVCVNYV 356


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = +3

Query: 582 LCFCYVFCVVYNFSCLCFV 638
           +C C+++  +  F C+ +V
Sbjct: 389 VCMCFIYASLLEFVCVNYV 407


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = +3

Query: 582 LCFCYVFCVVYNFSCLCFV 638
           +C C+++  +  F C+ +V
Sbjct: 338 VCMCFIYASLLEFVCVNYV 356


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 199 IPCVSCVFSKWIKFY 155
           +PCV  V   W+ F+
Sbjct: 253 VPCVLIVVLSWVSFW 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,585
Number of Sequences: 438
Number of extensions: 3414
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)