Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7a20
(286 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458 27 3.1
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454 26 4.1
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950... 26 4.1
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 26 5.4
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 25 7.1
04_04_0418 + 25077748-25078101,25079413-25079538,25080683-250815... 25 9.4
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 25 9.4
01_06_1200 - 35362412-35362432,35362526-35362715,35362799-353628... 25 9.4
>06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458
Length = 1217
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 54 VFYIYFNTITTIHV 13
++YIYFN ITT H+
Sbjct: 1175 LYYIYFNRITTSHI 1188
>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
Length = 748
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 43 DVKYHMPLHYQCDINADKNVVNAYDAIDVDPNKKFIIN 156
+VK +P+ YQC ++D + + A+D++ N + I+
Sbjct: 91 EVKVMLPVAYQCYNSSDSVTESFFGAVDLNNNGVYRIS 128
>05_03_0356 +
12894195-12894237,12894347-12894484,12894868-12895018,
12895399-12895526,12895704-12895840,12896742-12896847,
12898659-12898762,12899159-12899281,12899620-12899700,
12900159-12900304,12902171-12902243,12902970-12903060,
12904978-12905018,12906079-12906153,12906402-12906569,
12907638-12907676,12907759-12907847,12908014-12908078,
12908794-12908840,12908924-12908983,12909168-12909239,
12910143-12910172,12910526-12910617,12910719-12910802,
12911941-12912046,12912171-12912233,12912776-12912870,
12913000-12913180
Length = 875
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = -2
Query: 213 VSFIDDFLFVCFIDLFVIMINYKFFVGVNIDSVIRIYNVFICVN 82
+SF+ D + C IDL M+N+ + +++ + + + + V+
Sbjct: 497 ISFLSDLKWSCKIDLVSNMLNFSMWNSLHVAKYMDKFTLIVVVD 540
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 155 IIITNKSMKQTNKKSSIKLTQQHTI 229
II+T +S K N S+I+L+ HT+
Sbjct: 306 IIVTTRSEKVVNTLSTIRLSYFHTV 330
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +1
Query: 94 KNVVNAYDAIDVDPNKKFIINHNHEQVDETNKQEVVDKTD 213
+N++N D+I+ N+ + D +NK+ ++D D
Sbjct: 304 QNIINQADSIEHSSNRVESLPLETTSTDNSNKRNLIDDID 343
>04_04_0418 +
25077748-25078101,25079413-25079538,25080683-25081593,
25081970-25082453
Length = 624
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 255 YHLNFYDARIVCCCVSFI 202
+ L FY IVCCC + +
Sbjct: 577 FRLTFYVCAIVCCCGTLV 594
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -1
Query: 118 RHTHLQRFYLR*CHIDNVTAYGILHLF*YNYYYPC*KF 5
++ H F+L+ +DNV +G + ++ YP K+
Sbjct: 113 KNNHAAEFFLKTITLDNVPGHGAVVFVANSWIYPASKY 150
>01_06_1200 -
35362412-35362432,35362526-35362715,35362799-35362899,
35362985-35363116,35363204-35363302,35363493-35363568,
35363649-35363941,35364032-35364160,35364332-35364480,
35364562-35364633,35364728-35364776,35365039-35365107,
35365201-35365256,35365357-35365429,35365508-35365584,
35365847-35365934,35366086-35366259,35366358-35366473,
35366681-35366984,35367084-35367146,35367224-35367286,
35367393-35367506,35368672-35368675,35368894-35368952,
35369024-35369098,35369691-35369798,35372331-35372792
Length = 1071
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 88 ADKNVVNAYDAIDVDPNKKFIINHNHEQVDETNKQEVVDKTDA 216
AD + ++YDA+++D K H ++Q VVD + A
Sbjct: 859 ADSSKWHSYDAVNIDNVKANFYTFGHSLKKSGHEQLVVDPSFA 901
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.129 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,507,962
Number of Sequences: 37544
Number of extensions: 87471
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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