Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7a20
         (286 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens ...    28   4.8  
AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens ...    28   4.8  

>AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26336 fis, clone HRT02842. ).
          Length = 236

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = -2

Query: 252 HLNFYDARIVCCCVSFIDDFLFVCFIDLFVIMINY----KFFVGVNIDSVIRIY-NVFIC 88
           H+  +     C CV F      +C      + I+       ++ V I   I +Y +++IC
Sbjct: 133 HMCIFICTHACICV-FTSTHACICVFTCTHVYISVFTCTHVYICVFIYICIHVYIHIYIC 191

Query: 87  VNVTLIM*RHMVFYIYFNTITTIHVKSFF 1
           +++ +    HM  Y Y +T T  + + FF
Sbjct: 192 IHICVYSYIHM--YTYIHTYTYTYTQLFF 218


>AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46861 fis, clone UTERU3011092. ).
          Length = 291

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
 Frame = -2

Query: 252 HLNFYDARIVCCCVSF---IDDFLFVCFIDLFVIMINYKFFVGVNIDSVIRIYNVF-ICV 85
           H++ Y       C+     I  + ++C I ++  M  Y  ++ ++  + I +Y+   IC+
Sbjct: 64  HMHTYVYSYTRICIHMYVHIHAYAYIC-IFIYTHMHTY-MYIHMHAYAYIYVYSYTRICI 121

Query: 84  NVTLIM*RHMVFYIYFNTITTIHVKSF 4
           ++ + +  HM  Y+  +  T IH+  F
Sbjct: 122 HICIFICTHMHTYMCIHMYTCIHICVF 148


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.313    0.129    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,881,780
Number of Sequences: 237096
Number of extensions: 537935
Number of successful extensions: 1139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 76,859,062
effective HSP length: 71
effective length of database: 60,025,246
effective search space used: 1380580658
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)