Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7a18
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 32 0.55
12_02_1039 + 25610200-25610538,25611022-25611143,25611243-256113... 29 3.9
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721... 29 5.1
02_05_0239 + 27101440-27101904 29 5.1
03_06_0413 + 33756151-33756475,33756837-33756945,33757004-337570... 28 6.7
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 28 8.9
09_04_0639 - 19162501-19162878,19162974-19163126,19163366-191640... 28 8.9
07_01_0908 + 7653813-7653849,7655220-7655350,7655946-7656020,765... 28 8.9
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 28 8.9
01_01_0793 - 6182125-6182625 28 8.9
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 31.9 bits (69), Expect = 0.55
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 253 YHAKNESFLGFCNLEEIDYYQCLKMQYVLDQNFDND 360
++ E F GF +LEE+ +CLK+ L N ND
Sbjct: 1264 FYGSKEDFAGFTSLEELVISRCLKLVSFLAHNDGND 1299
>12_02_1039 +
25610200-25610538,25611022-25611143,25611243-25611390,
25611681-25611818,25612106-25612165,25612234-25612392,
25612714-25612912,25613156-25613260,25613339-25613475,
25613812-25614037,25614119-25614282,25614408-25614524,
25614622-25614864,25614959-25615054,25615270-25615287
Length = 756
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 565 YDPLITVFLQIGESINEEIQKLRKALVNF 651
YDP+I + GES N + KL+ +L NF
Sbjct: 440 YDPMIAKLVVWGESRNAALVKLKNSLSNF 468
>12_02_0134 -
14071190-14071435,14071800-14071988,14072114-14072194,
14072261-14072404,14072528-14072761,14072836-14073981,
14074863-14074922,14075178-14075420,14075509-14075607,
14076196-14076367,14076597-14076735,14077514-14077624,
14077695-14077797,14077885-14077962,14078054-14078122,
14078203-14078275,14078891-14078975,14079473-14079536,
14079963-14080073,14080139-14080213,14080306-14080398,
14080982-14081056,14081172-14081261
Length = 1259
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 4 ERNTNKTCVLE*PQKVYVHCCL 69
++N+N+ C L P + VHCCL
Sbjct: 637 KQNSNQKCRLSNPHALVVHCCL 658
>02_05_0239 + 27101440-27101904
Length = 154
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 469 KSTRYAPCCNGAFRRYCYTV*LVLSPRWPFC 377
++ R P C+ AF + C L +SPR P C
Sbjct: 102 RAVRVLPGCSRAFHQDCVDRWLTISPRCPVC 132
>03_06_0413 +
33756151-33756475,33756837-33756945,33757004-33757058,
33757059-33757094,33757196-33757282,33757737-33757808
Length = 227
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/73 (21%), Positives = 33/73 (45%)
Frame = +1
Query: 385 ANVVTKQVRPYNSIDEKHHYNTVRNVLILIKNARLVLSNSVKKQYYDDVLNLKKNTDLES 564
A+ + + + I + + +++LI N RL S+ + +Y+ D+L + T L
Sbjct: 94 ADQMVQSISSEGKIQGMQAFTSACALMLLIMNWRLFKSSIILLRYWTDILAMHSETSLLI 153
Query: 565 YDPLITVFLQIGE 603
+ LQ+ E
Sbjct: 154 LHSSVFAMLQVCE 166
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 370 TVYRMANVVTKQVRPYNSIDEKHHYNTVRNVLILIKN 480
TVY V T V PYNS+ H +V +L+ N
Sbjct: 170 TVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDN 206
>09_04_0639 -
19162501-19162878,19162974-19163126,19163366-19164046,
19164747-19164856,19165050-19165125
Length = 465
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = +1
Query: 196 REMSVVSDETAKRIRQNEHYHAKNESFLGFCNLEEIDYYQC 318
RE ++I+++ H H K+ + +GFC+ + + C
Sbjct: 348 RESKFRDSSHMRQIQEHRHEHLKSVTIIGFCSAKSLVELTC 388
>07_01_0908 +
7653813-7653849,7655220-7655350,7655946-7656020,
7657007-7657111,7657648-7657911,7658474-7658614
Length = 250
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +1
Query: 475 KNARLVLSNSVKKQYYDDVLNLKKNTDLESYDPLITVFLQIGESINEEIQKLRKALV 645
+N R+ +++ V DD L ++ + E+ + + V +IG IN+E+ K A V
Sbjct: 157 QNERMEMTSEVMGDAIDDALEGDEDQEEETEELVNQVLDEIGIDINQELVKAPSAAV 213
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 370 TVYRMANVVTKQVRPYNSIDEKHHYNTVRNVLILIKN 480
TVY V T V PYNS+ H +V +L+ N
Sbjct: 170 TVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDN 206
>01_01_0793 - 6182125-6182625
Length = 166
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -3
Query: 469 KSTRYAPCCNGAFRRYCYTV*LVLSPRWPFC 377
++ R PCC AF C L L P P C
Sbjct: 112 ETVRALPCCPHAFHARCVDAWLRLRPTCPLC 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,509,532
Number of Sequences: 37544
Number of extensions: 338735
Number of successful extensions: 824
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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