Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7a01
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0499 - 14733380-14733394,14733948-14733975,14735286-14736268     29   2.5  
05_01_0205 + 1475628-1475969,1477446-1477642,1478476-1478611,147...    29   2.5  
06_01_1138 - 9429447-9433868                                           29   3.3  
11_01_0417 - 3214320-3214435,3214606-3214702,3214766-3214768,321...    29   4.4  
01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716...    29   4.4  
12_01_0464 + 3635551-3635836,3635984-3636246                           28   7.7  
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473...    28   7.7  

>05_03_0499 - 14733380-14733394,14733948-14733975,14735286-14736268
          Length = 341

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 159 IKRTNADEPTPNVIGYVSDITQNTYTVTWFNTVD 58
           I + + D+ TP VI + SD   N YT TW    D
Sbjct: 241 ILQFDLDDQTPAVIEWPSDSDPNCYTQTWLTEGD 274


>05_01_0205 +
           1475628-1475969,1477446-1477642,1478476-1478611,
           1478706-1479178,1479287-1479404,1479762-1479911,
           1480039-1480125,1480536-1480829
          Length = 598

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 581 PDNNKTDAAVNTSSPKRAVETENDDDDDE 667
           PD  K    V+T  PK  ++T+ND D DE
Sbjct: 249 PDELKGKIIVSTKPPKEYLQTKNDADADE 277


>06_01_1138 - 9429447-9433868
          Length = 1473

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 602 AAVNTSSPKRAVETENDDDDDE 667
           AA ++S P +A +TE +DDDD+
Sbjct: 151 AAPSSSPPDQAADTEEEDDDDD 172


>11_01_0417 -
           3214320-3214435,3214606-3214702,3214766-3214768,
           3215054-3215196,3215309-3215348,3215713-3215765,
           3215889-3215962,3216081-3216163,3216287-3216355,
           3216456-3216800
          Length = 340

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 602 AAVNTSSPKRAVETENDDDDDE 667
           AA  T SP+ A   E +DDDDE
Sbjct: 70  AAATTPSPRGAAVAEGEDDDDE 91


>01_05_0420 +
           21969797-21970939,21971307-21971369,21971488-21971616,
           21972241-21972291,21972669-21972809,21972922-21973122,
           21973201-21973419,21973582-21973700,21973772-21973862,
           21975864-21975965,21976291-21976315,21976522-21976592
          Length = 784

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/68 (26%), Positives = 34/68 (50%)
 Frame = +2

Query: 389 IKVASSPQLRLLYKNAYSAVSCGNYSILCNLVQNGEYDLNAIMFNCAEIKLNKGQMLFQT 568
           I V  S +L+LL    ++ +    Y   C +++ G Y +NA++FN  +   +K Q L   
Sbjct: 676 IAVTPSCKLQLLMWTYFAELGANIY---CQILKIGNYQMNALLFN-PQAYNSKSQFLIFI 731

Query: 569 KIYRPDNN 592
            + + + N
Sbjct: 732 SLQQQEAN 739


>12_01_0464 + 3635551-3635836,3635984-3636246
          Length = 182

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 617 SSPKRAVETENDDDDDE 667
           S+ +RA+  ENDDDDDE
Sbjct: 48  SARRRAMAMENDDDDDE 64


>01_01_0628 -
           4731052-4731601,4731825-4732782,4733143-4733953,
           4734038-4734241,4734695-4734802,4735930-4736369,
           4736463-4736541
          Length = 1049

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 443 AVSCGNYSILCNLVQNGEYDLNAIMFNCAEIKL 541
           + SC  Y  +  L+++GE ++  ++F  A IKL
Sbjct: 533 SASCNLYDSIKELIESGEIEMKLLLFPSAIIKL 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,946,926
Number of Sequences: 37544
Number of extensions: 298941
Number of successful extensions: 1056
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)